Gene detail

Detail information of GWHGAAZE014156

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU25502.1	0	hypothetical protein MIMGU_mgv1a009728mg [Erythranthe guttata]
Swissprot	tr\|Q08467\|CSK21_ARATH	0	Casein kinase II subunit alpha-1 (Precursor)
trEMBL	tr\|A0A022QA09\|A0A022QA09_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU25502.1}
TAIR10	AT5G67380.1	2E-165	casein kinase alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6867771	6871272	-
GWHAAZE00000004	mRNA	6867771	6871272	-
GWHAAZE00000004	exon	6867771	6867845	-
GWHAAZE00000004	exon	6867936	6867999	-
GWHAAZE00000004	exon	6868328	6868410	-
GWHAAZE00000004	exon	6868528	6868593	-
GWHAAZE00000004	exon	6868681	6868771	-
GWHAAZE00000004	exon	6869305	6869462	-
GWHAAZE00000004	exon	6869702	6869896	-
GWHAAZE00000004	exon	6870300	6870429	-
GWHAAZE00000004	exon	6871187	6871272	-
GWHAAZE00000004	CDS	6871187	6871272	-
GWHAAZE00000004	CDS	6870300	6870429	-
GWHAAZE00000004	CDS	6869702	6869896	-
GWHAAZE00000004	CDS	6869305	6869462	-
GWHAAZE00000004	CDS	6868681	6868771	-
GWHAAZE00000004	CDS	6868528	6868593	-
GWHAAZE00000004	CDS	6868328	6868410	-
GWHAAZE00000004	CDS	6867936	6867999	-
GWHAAZE00000004	CDS	6867771	6867845	-

Transcript Sequence
>GWHTAAZE014170 ATGTCACAAGCTCGAGTCTACGCTGACGTCAATGTTCACCGCCCTAGAGAATACTGGGATTACGAGTCTCTCGCCGTTCAATGGGGTGATCAAGATGACTATGAGGTTGTTCGAAAAGTTGGGAGGGGAAAGTACAGCGAAGTCTTTGAAGGTATAAATGTCACCAACAATGAAAGATGCATCATCAAGATCCTTAAACCTGTCAAGAAAAAGAAGATAAGGAGGGAGATAAAGATACTTCAAAATCTTTGCGGAGGCCCAAATGTTGTGAAACTGCTAGATATTGTTAGAGATCAGCACTCAAAAACTCCCAGCTTGATTTTTGAATACGTGAACAGTACGGATTTCAAAGTTTTGTATCCCACACTGACAGATTACGACATACGCTATTACATCTATGAACTTCTCAAGGCATTAGATTTCTGTCATTCTCAGGGCATAATGCATAGAGATGTCAAACCCCACAATGTGATGATTGATCATGAGCTGCGGAAACTTAGGTTAATTGATTGGGGTCTTGCTGAATTCTACCATCCCTGCAAAGAATACAATGTCCGTGTAGCTTCAAGATACTTTAAGGGGCCTGAACTCCTTGTGGATTTGCAAGACTATGATTATTCCCTGGATATGTGGAGCCTTGGCTGTATGTTTGCAGGAATGATTTTTCGAAAGGAGCCATTCTTCTATGGTCATGACAATCAAGATCAGCTTGTCAAAATTGCCAAGGTTCTTGGCACAGATGAGTTGAATGCTTATCTGACCAAATATCGTTTAGAGCTGGAGCCTCAACTTGATGCTCTTGTTGGAAGGCACAGCAGGAAGCCCTGGTCTAGATTTATTAACGCTGACAATCAGCATCTAGTTTCCCCAGAGGCCATTGATTTTCTTGATAAGCTTCTTCGATATGATCATCAAGATAGGCTTACAGCAAAAGAAGCAATGGTATAA

Network for GWHGAAZE014156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	34	314	5.20E-62

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CK2

KEGG pathway

KO	Enzyme	pathway	mapID
K03097	CSNK2A	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.798
	SRR3591706	second leaf	25.040
	SRR3591707	mature leaf	20.298
	SRR3591708	Shoot apex	37.452
	SRR3591709	Stem	33.542
	SRR3591710	White floral bud	36.246
	SRR3591711	White flower	35.089
	SRR3591712	Green floral bud	36.562
	SRR3591713	Yellow flower	41.447
SRP173429	SRR8316895	Juvenile bud stage	23.519
	SRR8316896	Juvenile bud stage	33.713
	SRR8316897	Juvenile bud stage	21.606
	SRR8316894	Third green stage	13.467
	SRR8316900	Third green stage	36.642
	SRR8316901	Third green stage	42.578
	SRR8316898	Complete white stage	21.670
	SRR8316899	Complete white stage	55.928
	SRR8316903	Complete white stage	38.004
	SRR8316902	Silver flowering stage	23.850
	SRR8316904	Silver flowering stage	33.103
	SRR8316905	Silver flowering stage	14.796
	SRR8316906	Gold flowering stage	57.769
	SRR8316907	Gold flowering stage	55.266
	SRR8316908	Gold flowering stage	57.906
SRP132670	SRR6706286	Control	22.363
	SRR6706287	Light intensity 50%	24.402
	SRR6706288	Light intensity 20%	24.822
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.000
	CNS0095593	Slightly white alabastrum(diploid) 2	29.467
	CNS0095594	Slightly white alabastrum(diploid) 3	29.267
	CNS0095595	Whole white alabastrum(diploid) 2	31.400
	CNS0095596	Whole white alabastrum(diploid) 3	31.695
	CNS0095597	Whole white alabastrum(diploid) 4	27.344
	CNS0095598	Silvery flower (diploied) 1	38.187
	CNS0095599	Silvery flower (diploied) 2	31.864
	CNS0095600	Silvery flower (diploied) 3	41.290
	CNS0095601	Golden flower (diploid) 1	31.753
	CNS0095602	Golden flower (diploid) 2	37.222
	CNS0095603	Golden flower (diploid) 3	37.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.836
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.445
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.335
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.433
	CNS0095610	Silvery flower (tetraploid) 1	50.436
	CNS0095611	Silvery flower (tetraploid) 2	44.176
	CNS0095612	Silvery flower (tetraploid) 3	54.515
	CNS0095613	Golden flower (tetraploid) 1	39.984
	CNS0095614	Golden flower (tetraploid) 2	42.433
	CNS0095615	Golden flower (tetraploid) 3	50.303
CRA001975	CRR073297	Stem 1	22.728
	CRR073298	Stem 2	23.626
	CRR073299	Stem 3	20.148
	CRR073300	Leaf 1	23.887
	CRR073301	Leaf 2	22.619
	CRR073302	Leaf 3	22.060
	CRR073303	Juvenile bud 1	18.929
	CRR073304	Juvenile bud 2	15.808
	CRR073305	Juvenile bud 3	17.750
	CRR073306	Third green 1	17.306
	CRR073307	Third green 2	20.315
	CRR073308	Third green 3	18.336
	CRR073309	Second white 1	16.048
	CRR073310	Second white 2	21.592
	CRR073311	Second white 3	20.672
	CRR073312	Silver flowering 1	21.892
	CRR073313	Silver flowering 2	15.378
	CRR073314	Silver flowering 3	16.326
	CRR073315	Gold flowering 1	23.272
	CRR073316	Gold flowering 2	27.491
	CRR073317	Gold flowering 3	11.640
	CRR073318	Tawny withering 1	21.128
	CRR073319	Tawny withering 2	28.479
	CRR073320	Tawny withering 3	30.802