Gene detail

Detail information of GWHGAAZE014140

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004252747.1	2.8074E-158	PREDICTED: putative cyclin-A3-1 [Solanum lycopersicum]
Swissprot	tr\|Q9FMH5\|CCA31_ARATH	8E-136	Putative cyclin-A3-1
trEMBL	tr\|K4DGS4\|K4DGS4_SOLLC	1E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g088530.1.1}
TAIR10	AT5G43080.1	9E-110	Cyclin A3;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6619383	6621143	-
GWHAAZE00000004	mRNA	6619383	6621143	-
GWHAAZE00000004	exon	6619383	6619454	-
GWHAAZE00000004	exon	6619545	6619679	-
GWHAAZE00000004	exon	6619763	6619912	-
GWHAAZE00000004	exon	6620003	6620036	-
GWHAAZE00000004	exon	6620143	6620295	-
GWHAAZE00000004	exon	6620395	6620627	-
GWHAAZE00000004	exon	6621006	6621143	-
GWHAAZE00000004	CDS	6621006	6621143	-
GWHAAZE00000004	CDS	6620395	6620627	-
GWHAAZE00000004	CDS	6620143	6620295	-
GWHAAZE00000004	CDS	6620003	6620036	-
GWHAAZE00000004	CDS	6619763	6619912	-
GWHAAZE00000004	CDS	6619545	6619679	-
GWHAAZE00000004	CDS	6619383	6619454	-

Transcript Sequence
>GWHTAAZE014154 ATGGCGGACCTGGAGAATAACGTGCGCGTCACTCGCTTAGCAAAGAAGAGGGCCGCTGCCGGACCTGATTCTCAGCAGCAACCCGCCACCAAGAAAAGGGTGGTGCTAGGCGAGCTTCCGAACAATTCGAATGTCCCTGTGGAGGTAAAGAGGAGGCCCCTTCCAGATTATATTGAGAAGATTCAGAAGGATGTCAGTGTTAACATGAGAGCCATTTTGGTGGACTGGTTGGTTGAAGTTTCAGAGGAATACAAGCTTCTTTCAGATACTCTGTATCTGACGATCAATTACATTGATAGATTCTTGTCTGTAAATGCTCTTAATAGGCAGAAGCTTCAGCTTCTTGGTGTATCATCAATGCTTATTGCCTCGAAATATGAAGAGATCAAACCTCCGCATGTAGAAGATTTTTGTTATATTACTGATAATACCTACAGCAAGGAAGAGGTGGTGAAGATGGAAGCTGAGGTTCTCAAAGCCCTAAAGTTTGAAATGGGCAGTCCCACAATCAAGTCATTTCTCAGAAGGTTTACCAGGGTTGCTCAAGAAGATTATAAAACCTCTAATTTGCAGTTGGAGTTCTTGGGTTATTACCTAGCAGAATTAAGCCTCTTAGATTACAGTTGTCTCAAATTCTTACCTTCTTTGGTAGCTGCATCGGTAGTATTTCTTGCGAGGTTCACAATCAGACCAAAGTTACATCCTTGGAGCTCAGCTTTGCATGAAAATTCTGGTTACAAGGCAGCAGATTTAAAGGAATGTGTTCTCATAATACATGAGTTGCAATTGAGTAAAAGAGGAAGCTCTTTGGCGGCAGTGAGAGATAGATACAAACATCATAAGTTCAAATGTGTGTCAACATTGTCTTCTCTTCCAGAGATACCCAATTCCTTCTTTGACGGTGTTAAAGAATGA

Network for GWHGAAZE014140

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.24	Cyclin_N	48	165	1.20E-42
PF02984.20	Cyclin_C	168	290	5.60E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06627	CCNA	AMPK signaling pathway	map04152
		Cell cycle	map04110
		Cellular senescence	map04218
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.389
	SRR3591706	second leaf	2.849
	SRR3591707	mature leaf	0.996
	SRR3591708	Shoot apex	27.151
	SRR3591709	Stem	5.061
	SRR3591710	White floral bud	0.924
	SRR3591711	White flower	0.965
	SRR3591712	Green floral bud	1.070
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.216
	SRR8316896	Juvenile bud stage	2.835
	SRR8316897	Juvenile bud stage	2.554
	SRR8316894	Third green stage	1.083
	SRR8316900	Third green stage	1.936
	SRR8316901	Third green stage	1.116
	SRR8316898	Complete white stage	0.250
	SRR8316899	Complete white stage	2.030
	SRR8316903	Complete white stage	0.204
	SRR8316902	Silver flowering stage	0.164
	SRR8316904	Silver flowering stage	0.116
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.268
	SRR8316907	Gold flowering stage	0.278
	SRR8316908	Gold flowering stage	0.169
SRP132670	SRR6706286	Control	0.611
	SRR6706287	Light intensity 50%	0.466
	SRR6706288	Light intensity 20%	0.933
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.876
	CNS0095593	Slightly white alabastrum(diploid) 2	3.629
	CNS0095594	Slightly white alabastrum(diploid) 3	2.418
	CNS0095595	Whole white alabastrum(diploid) 2	2.679
	CNS0095596	Whole white alabastrum(diploid) 3	0.923
	CNS0095597	Whole white alabastrum(diploid) 4	0.970
	CNS0095598	Silvery flower (diploied) 1	2.202
	CNS0095599	Silvery flower (diploied) 2	1.950
	CNS0095600	Silvery flower (diploied) 3	1.127
	CNS0095601	Golden flower (diploid) 1	3.661
	CNS0095602	Golden flower (diploid) 2	1.540
	CNS0095603	Golden flower (diploid) 3	1.433
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.063
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.136
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.727
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.584
	CNS0095610	Silvery flower (tetraploid) 1	0.173
	CNS0095611	Silvery flower (tetraploid) 2	0.169
	CNS0095612	Silvery flower (tetraploid) 3	0.277
	CNS0095613	Golden flower (tetraploid) 1	0.280
	CNS0095614	Golden flower (tetraploid) 2	0.170
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.741
	CRR073298	Stem 2	2.141
	CRR073299	Stem 3	2.618
	CRR073300	Leaf 1	1.027
	CRR073301	Leaf 2	0.755
	CRR073302	Leaf 3	0.542
	CRR073303	Juvenile bud 1	0.735
	CRR073304	Juvenile bud 2	0.090
	CRR073305	Juvenile bud 3	0.345
	CRR073306	Third green 1	0.043
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.167
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.233
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.009
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.470
	CRR073316	Gold flowering 2	0.337
	CRR073317	Gold flowering 3	0.833
	CRR073318	Tawny withering 1	4.077
	CRR073319	Tawny withering 2	3.696
	CRR073320	Tawny withering 3	3.507