Gene detail

Detail information of GWHGAAZE014126

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007225135.1	0	hypothetical protein PRUPE_ppa002533mg [Prunus persica]
Swissprot	tr\|Q93Y06\|Y5720_ARATH	0	Probable inactive receptor kinase At5g67200 (Precursor)
trEMBL	tr\|M5XK69\|M5XK69_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26334.1}
TAIR10	AT5G43020.1	6E-173	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6322396	6326799	-
GWHAAZE00000004	mRNA	6322396	6326799	-
GWHAAZE00000004	exon	6325431	6326799	-
GWHAAZE00000004	exon	6322396	6323090	-
GWHAAZE00000004	CDS	6325431	6326799	-
GWHAAZE00000004	CDS	6322771	6323090	-
GWHAAZE00000004	three_prime_UTR	6322396	6322770	-

Transcript Sequence
>GWHTAAZE014140 ATGAGAATAGAAGAATTAGTTTGCAATGCCGTTGTTTTGTTGTCTCTGTTCCAACTATCTTCTTCCGTTAACAATATTAACAACTTACTCCCACCTTCCGATGCATCGGCTCTGCTATCATTCAAATCTAAAGCTGATTTAGGTAACAAACTTCCATTCTCCAATAAAACAAGCTTCTCATACTGCGAATGGCCAGGGGTACAATGCCTTCAACGTAAAGTGTCCCGTCTAGTCCTCGAAAGCTTGAATCTCGGCGGCATTTTTGCTCCCAACACTTTAACTCGTCTCCATCAATTGAGAGTCCTCAGTTTGCAGAACAACTCCTTGGTCGGACCACTCCCCGACCTCTCCGCTCTCCTCAATCTCAAAACCCTCTTTCTCGACCATAACTTCTTCACTGGTTTACTACCTCCTTCAATCTCCTCCCTTCACCGTCTCCGAACACTAGATCTCTCTTTCAACAACCTCACCGGTCCATTACCTTTCTCTTTTACCAACCTAGACCGCCTGTACTATCTTCGTCTCGACTCCAACTGCCTCAACGCTTCCATTCCTCCACTCAACCAGTCCACTCTCCTAATCTTCAACGTTTCCGCTAACAATTTAACCGGCGCCGTGCCGGTGACTCCGGCTCTTCTCCGCTTCGGTAAGTCTTCGTTTGCCGGTAACGCCGGACTCTGCGGTGAGGTCGTACACAAGGAATGCCGGCCGATGCTTCCGTTCTTCGGTTCTTCAACGCCGGAAGCACCGCCTCCGCCGGTAGTCCTCGGCCAAAACGAGCAAATACAAGAAGCTGAGTTAAATCGGCCCAGTCGGTCGCGGCAGAAAAGAACCGGGGTCATTGTTGGCTTCTCAGCCGGTGTAGTCGTTCTCATTTGTTCAGCACTCTGCTTTGTGATGGCGGTAAAGAAGCAGAAAAACCAGAAGGTGTCCACAACAATGGCTTCAGATTATGCGGCAACCGCTGATGCGGAGGCGGTGATGAGAATCGAAGAGGAGAACGAGTTGGAAGCGAAGGTGAAGAAAGTGCAGAGTATTAAAAGCGGGAGTTTAGTATTCTGTGCGGGTGAATCGAGGCTTTATGCGCTGGATCAGTTGATGAGAGCTTCAGCAGAGCTGCTAGGGAAGGGGAGCATCGGAACCACCTATAAGGCTGTGCTGGACAACCGTTTGATTGTCTGCGTGAAGAGACTCGACGCCGGAAAGCTGGCCGGAACGAGCCATGAAGAGTTCGAGCGGCATATGGAGTCGGTGGGTGGGCTGCGTCACCCAAATTTGGTGCCATTGAGAGCATATTATCAGGCCAAAGATGAGAGATTGCTCGTCTACGACTACCAGCCAAACGGCAGTTTATTCTCTCTCATTCACGGTTCAAAATCAGCAAAAGCAAAGCCTCTGCACTGGACGTCATGCTTAAAAATAGCAGAGGATGTAGCACAAGGCCTCTCCTACATCCACCAGGCATGGAGACTCGTCCATGGCAATCTCAAGTCCTCCAATGTACTCCTTGGCTCTGACTTCGAGGCCTGCCTCACCGACTACTGCCTCTCCATCCTAACCGACCCCTCATCCTCAGACGAGGACTCCGATTCTGCTGCCTACAAAGCACCCGAAACCCTCAAGTTAAACAGCCAAGCAACCACCAAGTCTGATGTATACACATTCGAATTCTCTTGCTTGTACTTGTAACTGGCAAGCCTCCATCACAACACCCGTATCTAATGCCAGACGATATGGTGAAATGGGTGAGGTCTGCTCGGGGAGATGAAGGTGTTGGGGAGGATAACAGGCTGATAATGCTGGTTGAAGTAGCAATGGCTTGTAGTGGAAAGTCACCGGAGCAGAGACCGACCATGTGGCAAGTGTTGAAGATGATACAGGAAATTAAAGAGACTGTTATAATGGATGATTGCGAATTGGACCCGACTTCAGGGATCTCCTAGTTATTGTGGTCTGTACCATACCCATGAGTAATGCCATAACAAAGAAACATATACATATAGAAGGCAAAACTGCTCGATTGCTCTCACCAAGGCAAATTAGTTTCGAGTGAGGGGAAAGCTT

Network for GWHGAAZE014126

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	121	178	1.60E-07
PF00069.26	Pkinase	371	554	1.00E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.117
	SRR3591706	second leaf	21.355
	SRR3591707	mature leaf	1.461
	SRR3591708	Shoot apex	56.441
	SRR3591709	Stem	4.825
	SRR3591710	White floral bud	8.669
	SRR3591711	White flower	6.084
	SRR3591712	Green floral bud	18.419
	SRR3591713	Yellow flower	0.210
SRP173429	SRR8316895	Juvenile bud stage	15.360
	SRR8316896	Juvenile bud stage	14.487
	SRR8316897	Juvenile bud stage	6.498
	SRR8316894	Third green stage	7.541
	SRR8316900	Third green stage	12.889
	SRR8316901	Third green stage	10.726
	SRR8316898	Complete white stage	0.202
	SRR8316899	Complete white stage	11.777
	SRR8316903	Complete white stage	3.018
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.049
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.247
SRP132670	SRR6706286	Control	14.861
	SRR6706287	Light intensity 50%	15.192
	SRR6706288	Light intensity 20%	15.948
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.747
	CNS0095593	Slightly white alabastrum(diploid) 2	17.139
	CNS0095594	Slightly white alabastrum(diploid) 3	13.881
	CNS0095595	Whole white alabastrum(diploid) 2	11.873
	CNS0095596	Whole white alabastrum(diploid) 3	7.536
	CNS0095597	Whole white alabastrum(diploid) 4	7.945
	CNS0095598	Silvery flower (diploied) 1	24.852
	CNS0095599	Silvery flower (diploied) 2	15.691
	CNS0095600	Silvery flower (diploied) 3	5.090
	CNS0095601	Golden flower (diploid) 1	18.358
	CNS0095602	Golden flower (diploid) 2	12.021
	CNS0095603	Golden flower (diploid) 3	10.977
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.138
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.808
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.385
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.757
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.092
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.791
	CNS0095610	Silvery flower (tetraploid) 1	0.490
	CNS0095611	Silvery flower (tetraploid) 2	7.722
	CNS0095612	Silvery flower (tetraploid) 3	2.347
	CNS0095613	Golden flower (tetraploid) 1	0.079
	CNS0095614	Golden flower (tetraploid) 2	0.462
	CNS0095615	Golden flower (tetraploid) 3	0.093
CRA001975	CRR073297	Stem 1	63.273
	CRR073298	Stem 2	56.608
	CRR073299	Stem 3	74.022
	CRR073300	Leaf 1	31.530
	CRR073301	Leaf 2	28.096
	CRR073302	Leaf 3	22.649
	CRR073303	Juvenile bud 1	14.133
	CRR073304	Juvenile bud 2	3.037
	CRR073305	Juvenile bud 3	17.698
	CRR073306	Third green 1	0.220
	CRR073307	Third green 2	0.398
	CRR073308	Third green 3	0.340
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.030
	CRR073311	Second white 3	0.222
	CRR073312	Silver flowering 1	0.069
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.304
	CRR073316	Gold flowering 2	0.590
	CRR073317	Gold flowering 3	1.958
	CRR073318	Tawny withering 1	11.051
	CRR073319	Tawny withering 2	3.365
	CRR073320	Tawny withering 3	8.145