Gene detail

Detail information of GWHGAAZE014116

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009800439.1	0	PREDICTED: subtilisin-like protease [Nicotiana sylvestris]
Swissprot	tr\|Q3EDL4\|Y1154_ARATH	0	Probable serine/threonine-protein kinase At1g01540
trEMBL	tr\|F6H1C4\|F6H1C4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45833.1}
TAIR10	AT5G67090.1	2E-174	Subtilisin-like serine endopeptidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6097139	6108538	-
GWHAAZE00000004	mRNA	6097139	6108538	-
GWHAAZE00000004	exon	6108451	6108538	-
GWHAAZE00000004	exon	6107928	6108246	-
GWHAAZE00000004	exon	6106632	6106736	-
GWHAAZE00000004	exon	6106418	6106540	-
GWHAAZE00000004	exon	6106167	6106337	-
GWHAAZE00000004	exon	6105949	6106078	-
GWHAAZE00000004	exon	6105618	6105827	-
GWHAAZE00000004	exon	6105371	6105468	-
GWHAAZE00000004	exon	6097139	6099185	-
GWHAAZE00000004	CDS	6108451	6108538	-
GWHAAZE00000004	CDS	6107928	6108246	-
GWHAAZE00000004	CDS	6106632	6106736	-
GWHAAZE00000004	CDS	6106418	6106540	-
GWHAAZE00000004	CDS	6106167	6106337	-
GWHAAZE00000004	CDS	6105949	6106078	-
GWHAAZE00000004	CDS	6105618	6105827	-
GWHAAZE00000004	CDS	6105371	6105468	-
GWHAAZE00000004	CDS	6097139	6099185	-

Transcript Sequence
>GWHTAAZE014130 ATGTCTGGTAATGATAAGCATGGGTTCTTGAACGATGAGCTTTCGAAAAGAACTTCAATTTTTGGCTTACGTTTATGGGTAGTTTTGGCCGGAGCAGAACAGAAAGCTTTGCTTCTAGAGGATGAGACTCAAATTGAACGGCAGAGGAATATTGTTCACATTGAGATTGGTAAGGGTCATAGGATTGCGTACCCAGAGCGGGGCGGCGGGTCGGGTGATCAGGTAGTGGTCGTGCCGGAGGTTTCACATTTGGGGTGGGGACATTGGTACACTTTGAGAGAGCTTGAAGTTGCAACTGATGGGTTTAGCGATGAGAATGTGATTGGTGAAGGTGGGTATGGGATTGTTTACAGTGGGGTTCTGGAGGATAATACTCGAGTTGCTGTTAAGAATTTGCTCAATAACAGGGGACAAGCTGAGAAGGAATTTAAGGTTGAAGTTGAAGCGATTGGTCGTGTTCGACACAAAAATTTGGTAAGGCTTCTTGGATACTGTGCTGAAGGTGCTCACAGGATCCTTGTTTACGAGTATGTAGACAATGGGAACCTAGAACAGTGGCTTCATGGAGATGTTGGACCTTGTAGCCCTCTTACATGGGATATTCGTATGAATGTCGTACTTGGAACCGCAAAAGGGTTGACTTATCTGCATGAGGGGCTCGAGCCCAAGGTTGTTCACCGGGATATCAAGTCGAGCAATATCTTGCTTGATAAGCAGTGGAATTCAAAAGTATCCGATTTTGGGCTGGCCAAACTCTTGGGCTCAGAGAGGAGTTACGTGACTACTCGGGTGATGGGAACATTTGGCTATGTTGCTCCAGAATATGCTAGCACCGGCATGTTGAATGAGAGGAGTGATGTTTATAGTTTTGGTATTCTTATTATGGAGATCATAAGTGGGAGAAATCCTGTGGACTATAGCCGTCCTCAAGGGGAGGTGAACCTAGTGGATTGGCTTAAAGCAATGGTGACAAACCGGAATGCAGAGGGAGTTTTGGATCCTAAGTTACCTGAGAAGCCTTCTTCAAGAGCACTGAAACGCGCTCTTTTAGTAGCGTTACGTTGTGTAGACCCAAATGCTCAGAAGAGGCCAAAGATGGGGCATGTGATACATATGCTTGAAGCAGATGATTTCCCTTTCCGAGATGAGCGTCGAGGTGGAAGGGAACAGGGGCGGACACACCGTGATGGCATAAAAGAGAGGTATATGGAGAAGCGTTTGATCGAATCTGGTGATAGCAGTGGCGCAATTCTCTCTCCACCTGAGCTCGAAGAAATTAAAAACACCCCCGGGTACATTTTTTCGACTAGAGACTTGCCCGTTAAAGTTGACACAACTCGCTCCTCCCAATTCCTCGGCCTCAACTCTAACTCTGGGGCGTGGCCAGATTCGAGCTATGGCAAAGACGTAATAATCGGGCTAGTCGACACTGGCGTCTGGCCCGAGAGTAGAAGCTACGACGACAGTGGAATGGACGAAATTCCTTCAAGGTGGAAAGGCGAGTGTGAGAGTGGCGCCCAATTCAACTCCTCTTTGTGCAACAAAAAGCTAATCGGAGCTAGATATTTCAACAAAGGCCTGTTAGCTAAGAAACCCAATTTGACCATTTCGATGAACTCTCCTCGTGATACGGATGGGCACGGGACCCACACTTCATCCACCGCTGCTGGAAATTACGTTAAAGATGCTTCATACTTCGGCTATGCCGCCGGCACAGCTAGAGGAATGGCCCCACAGGCTAGGGTTGCCATGTATAAAGCATTGTTTGATGAAGGTGTTGCTTTGTCCGATATTTTGGCAGCCATTGATCAGGCAATTTTCGATGGTGTAGATATTCTCTCTCTGTCATTAGGCATAGATGGTGTGGCTTTAGAAGAAGATCCAATTGCTATAGCCACATTTGCTGCGCTTGAGAAGGGTATTTTCGTCTCTACATCGGCTGGAAACGAGGGGCCTTATATCGAGTCATTACATAACGGCACGCCTTGGGTGCTCACTGTTGCAGCTGGTACTATTGATCGTGAGTTCCTTGGAAATGTAACCCTTGGAAATGGAAATTCAATCACGGGCTCTTCTTTGTATCCAGGGAATTCAAGTTCCAGCCAAGTCCCTATTGTTTTCATGGACAAATGTGATGATTTGGAGGAATTGAAGAAAGTTGGGCACAAGATTGTGGTGTGTTTGGACACAAATGATACCTTAAGTGACCAATTTAACAATCTTGAAAACACAAGAGGACTTGCTGGTGGCATTTTTGTAACAAACAATACCGACGTGGAATTCTTCATTCAAAGCTCAATTCCGGCTGTTTTTTTGAACCCTCAAGGAGGAGAAATCGTTATTGATTACGTCAAGAAAAATGAGGAACCCAAAGCGCATTTCAAATTCCAACAAACCCGTATTGGTACCAAACCAGCTCCGACGGTGGCTAGCTACAGCTCTAGAGGTCCATCACCGAGCTGCCCGTTTGTGTTAAAGCCCGACCTTATGGCTCCGGGTGATTTAATTTTAGCAGCGTGGCCTAAAAATACTAAGGTCACGGATTTGGCTGTGGGCCCTATTTTTAGTAATTTTAATCTCTTGTCAGGTACGTCAATGTCGTGCCCTCACACTGCCGGAGTGGCAGCGTTGCTTAAAGGGGTCCACCCAGAGTGGAGCCCCGCAGCCATCCGGTCAGCAATGATGACGACGTCTTACGAGTTGGACAACACTAACCAACCCATACAAGACCGCGGTAACAATAGCCAACCGGCCACTCCACTAGCCATGGGAGCTGGCCACATCAATCCAAACAAGGCATTAGATCCTGGACTCATATATGACGTAAAATCTGAAGATTACATTAATCTCCTCTGCGCTTTAAATTATACGACGAAGCAAATACAAATAATTGCCAGGTCGTCATCTTTCAATTGCTCCAACGCCTCGTTGGACCTCAACTACCCGTCTTTCATTGCTTTTTTCAATACGAATGACTCAAATTCGGATGTTAAAACAGTACAAGAATATTGGAGGACGGTTACAAATGTGGGAGAGGGAAATTCGACGTACAAAGCGTATTTGACCGGGATGGATGGATTAAAAGTGGGTGTGGTGCCGGACAAGTTGGTGTTTAAAGAAAAGAATGAGAAGAAAAGATACAAGCTGAGTATAGAAGGTACAAGACTGTTAAAAGATTTGGTGGTTTATGGGTCCCTCAGCTGGGTAGAAAATGGAGGTGAACATGTAGTAAGAAGTCCCATAGTGGCAACAAGCCTTAGCTCAGAGATGTTGTCGGGGCAGCAGAACTAA

Network for GWHGAAZE014116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	103	371	3.80E-46
PF00082.23	Peptidase_S8	467	910	4.40E-41
PF17766.2	fn3_6	978	1082	1.00E-24

Protein Sequence

>GWHPAAZE014123
MSGNDKHGFLNDELSKRTSIFGLRLWVVLAGAEQKALLLEDETQIERQRNIVHIEIGKGHRIAYPERGGGSGDQVVVVPEVSHLGWGHWYTLRELEVATDGFSDENVIGEGGYGIVYSGVLEDNTRVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRILVYEYVDNGNLEQWLHGDVGPCSPLTWDIRMNVVLGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEIISGRNPVDYSRPQGEVNLVDWLKAMVTNRNAEGVLDPKLPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEADDFPFRDERRGGREQGRTHRDGIKERYMEKRLIESGDSSGAILSPPELEEIKNTPGYIFSTRDLPVKVDTTRSSQFLGLNSNSGAWPDSSYGKDVIIGLVDTGVWPESRSYDDSGMDEIPSRWKGECESGAQFNSSLCNKKLIGARYFNKGLLAKKPNLTISMNSPRDTDGHGTHTSSTAAGNYVKDASYFGYAAGTARGMAPQARVAMYKALFDEGVALSDILAAIDQAIFDGVDILSLSLGIDGVALEEDPIAIATFAALEKGIFVSTSAGNEGPYIESLHNGTPWVLTVAAGTIDREFLGNVTLGNGNSITGSSLYPGNSSSSQVPIVFMDKCDDLEELKKVGHKIVVCLDTNDTLSDQFNNLENTRGLAGGIFVTNNTDVEFFIQSSIPAVFLNPQGGEIVIDYVKKNEEPKAHFKFQQTRIGTKPAPTVASYSSRGPSPSCPFVLKPDLMAPGDLILAAWPKNTKVTDLAVGPIFSNFNLLSGTSMSCPHTAGVAALLKGVHPEWSPAAIRSAMMTTSYELDNTNQPIQDRGNNSQPATPLAMGAGHINPNKALDPGLIYDVKSEDYINLLCALNYTTKQIQIIARSSSFNCSNASLDLNYPSFIAFFNTNDSNSDVKTVQEYWRTVTNVGEGNSTYKAYLTGMDGLKVGVVPDKLVFKEKNEKKRYKLSIEGTRLLKDLVVYGSLSWVENGGEHVVRSPIVATSLSSEMLSGQQN

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0006468	biological_process	protein phosphorylation
GO:0004252	molecular_function	serine-type endopeptidase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.585
	SRR3591706	second leaf	52.619
	SRR3591707	mature leaf	19.285
	SRR3591708	Shoot apex	20.805
	SRR3591709	Stem	8.920
	SRR3591710	White floral bud	15.821
	SRR3591711	White flower	10.540
	SRR3591712	Green floral bud	5.002
	SRR3591713	Yellow flower	18.518
SRP173429	SRR8316895	Juvenile bud stage	6.962
	SRR8316896	Juvenile bud stage	8.216
	SRR8316897	Juvenile bud stage	3.513
	SRR8316894	Third green stage	2.640
	SRR8316900	Third green stage	5.270
	SRR8316901	Third green stage	4.609
	SRR8316898	Complete white stage	1.384
	SRR8316899	Complete white stage	5.878
	SRR8316903	Complete white stage	2.673
	SRR8316902	Silver flowering stage	3.351
	SRR8316904	Silver flowering stage	6.162
	SRR8316905	Silver flowering stage	3.573
	SRR8316906	Gold flowering stage	11.411
	SRR8316907	Gold flowering stage	33.019
	SRR8316908	Gold flowering stage	22.770
SRP132670	SRR6706286	Control	7.175
	SRR6706287	Light intensity 50%	7.333
	SRR6706288	Light intensity 20%	7.767
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.405
	CNS0095593	Slightly white alabastrum(diploid) 2	3.400
	CNS0095594	Slightly white alabastrum(diploid) 3	3.851
	CNS0095595	Whole white alabastrum(diploid) 2	3.038
	CNS0095596	Whole white alabastrum(diploid) 3	2.993
	CNS0095597	Whole white alabastrum(diploid) 4	3.112
	CNS0095598	Silvery flower (diploied) 1	7.537
	CNS0095599	Silvery flower (diploied) 2	5.189
	CNS0095600	Silvery flower (diploied) 3	10.221
	CNS0095601	Golden flower (diploid) 1	8.519
	CNS0095602	Golden flower (diploid) 2	29.296
	CNS0095603	Golden flower (diploid) 3	30.010
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.812
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.274
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.783
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.781
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.199
	CNS0095610	Silvery flower (tetraploid) 1	13.036
	CNS0095611	Silvery flower (tetraploid) 2	15.099
	CNS0095612	Silvery flower (tetraploid) 3	9.320
	CNS0095613	Golden flower (tetraploid) 1	21.822
	CNS0095614	Golden flower (tetraploid) 2	15.166
	CNS0095615	Golden flower (tetraploid) 3	46.478
CRA001975	CRR073297	Stem 1	12.475
	CRR073298	Stem 2	10.156
	CRR073299	Stem 3	14.508
	CRR073300	Leaf 1	7.611
	CRR073301	Leaf 2	7.205
	CRR073302	Leaf 3	6.284
	CRR073303	Juvenile bud 1	5.802
	CRR073304	Juvenile bud 2	3.715
	CRR073305	Juvenile bud 3	6.138
	CRR073306	Third green 1	2.180
	CRR073307	Third green 2	4.343
	CRR073308	Third green 3	3.246
	CRR073309	Second white 1	7.915
	CRR073310	Second white 2	6.269
	CRR073311	Second white 3	7.665
	CRR073312	Silver flowering 1	14.293
	CRR073313	Silver flowering 2	15.511
	CRR073314	Silver flowering 3	19.088
	CRR073315	Gold flowering 1	15.135
	CRR073316	Gold flowering 2	17.422
	CRR073317	Gold flowering 3	13.388
	CRR073318	Tawny withering 1	10.622
	CRR073319	Tawny withering 2	5.736
	CRR073320	Tawny withering 3	10.742