Gene detail

Detail information of GWHGAAZE014115

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284836.1	7.7387E-167	PREDICTED: heat stress transcription factor B-4 [Vitis vinifera]
Swissprot	tr\|Q9C635\|HSFB4_ARATH	8E-113	Heat stress transcription factor B-4
trEMBL	tr\|A5APA7\|A5APA7_VITVI	3E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66983.1}
TAIR10	AT1G46264.1	2E-92	heat shock transcription factor B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6033888	6035133	-
GWHAAZE00000004	mRNA	6033888	6035133	-
GWHAAZE00000004	exon	6034764	6035133	-
GWHAAZE00000004	exon	6033888	6034664	-
GWHAAZE00000004	five_prime_UTR	6035013	6035133	-
GWHAAZE00000004	CDS	6034764	6035012	-
GWHAAZE00000004	CDS	6033888	6034664	-

Transcript Sequence
>GWHTAAZE014129 CCTACCCTTCCTTCAACACACCCAAATCCTAAAACCTCCCAAAAAAACTCACACACACATACACTTAATTCTCTCAACTCAGCTCAGCTCAGCTCAGATATTTTTACAACTTTTGTTTTCAATGGCTTTGATGCTAGACAACTGTGAAGGCATATTACTCTCATTAGACTCCCACAAATCAGTACCAGCCCCTTTCCTCACCAAAACTTACCAACTCGTTGACGATCCTTCCACCGACCACATAGTTTCCTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCACCGGAGTTCGCTCGCGACCTCCTCCCCAACTACTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGTTTCCGAAAGATCGTACCAGACAGATGGGAGTTTGCGAACGAGTATTTCAAAAAGGGAGAGAAGCATTTGCTGTGCGAGATCCACCGCAGAAAAACATCTCAGCCGCAAGTCTCCATCAACCACCACTTCAACAATCAACATTCATCAGCATTTAGCGGGACGGGTTTCTTCCCGTACCAGAACCGAGCAAGTATTTCCCCGCCCGACTCCGACGATCAAGCCAACTGGTGTGACTCGCCCCCCGATCTGCCCTCGCCTCCACATGGGACAGGGCTCTCCGTTAGTTACAATAGCTCGGTGACAGCGCTGTCGGAGGATAACGAGAGACTGAGGCGGAGCAACAACATGCTCGTGTCTGAGCTGGCACACATGAGGAAGCTATACAATGATATTATATATTTTGTTCAGAATCACGTTAAACCTGTCGCACCTAGTCACTCATCATGCTATCCTTCTTCTGCTAATATTAACGGCCCTATGGTGCAAAAGGTGCCGAATCAGTTTTACGCTAAACAAGGCGGCGGTCATCATGTTATGGGAATGTTCAGCGGTACAAGTAATGGTGCGCAGAGTACAAGTGTGAGGATACGCGAAGAAGCTGCAGGGAATGGTAATGTGATAAGTGGAACGAAGTTATTCGGAGTGCCAATTATGTCAAAGAAGAGATTGCACCCTGAATATCACAATCATAATAATATGGAGACTCACAAACCACGTTTGGTGTTGGAAAAAGATGATTTAGGGTTGAATCTCATGCCTCCCTCCCCATGTTAG

Network for GWHGAAZE014115

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00447.18	HSF_DNA-bind	25	114	1.10E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.351
	SRR3591706	second leaf	1.453
	SRR3591707	mature leaf	0.366
	SRR3591708	Shoot apex	8.546
	SRR3591709	Stem	9.348
	SRR3591710	White floral bud	0.713
	SRR3591711	White flower	0.128
	SRR3591712	Green floral bud	0.467
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.884
	SRR8316896	Juvenile bud stage	1.975
	SRR8316897	Juvenile bud stage	0.838
	SRR8316894	Third green stage	0.288
	SRR8316900	Third green stage	0.349
	SRR8316901	Third green stage	0.302
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.413
	SRR8316903	Complete white stage	0.167
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.039
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.094
SRP132670	SRR6706286	Control	0.810
	SRR6706287	Light intensity 50%	0.411
	SRR6706288	Light intensity 20%	0.489
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.573
	CNS0095593	Slightly white alabastrum(diploid) 2	0.638
	CNS0095594	Slightly white alabastrum(diploid) 3	0.450
	CNS0095595	Whole white alabastrum(diploid) 2	0.569
	CNS0095596	Whole white alabastrum(diploid) 3	0.087
	CNS0095597	Whole white alabastrum(diploid) 4	0.366
	CNS0095598	Silvery flower (diploied) 1	1.026
	CNS0095599	Silvery flower (diploied) 2	0.210
	CNS0095600	Silvery flower (diploied) 3	0.060
	CNS0095601	Golden flower (diploid) 1	0.498
	CNS0095602	Golden flower (diploid) 2	0.087
	CNS0095603	Golden flower (diploid) 3	0.270
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.860
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.286
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.400
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.385
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.227
	CNS0095610	Silvery flower (tetraploid) 1	0.118
	CNS0095611	Silvery flower (tetraploid) 2	0.677
	CNS0095612	Silvery flower (tetraploid) 3	0.411
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.187
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.443
	CRR073298	Stem 2	1.750
	CRR073299	Stem 3	4.412
	CRR073300	Leaf 1	0.679
	CRR073301	Leaf 2	0.888
	CRR073302	Leaf 3	0.447
	CRR073303	Juvenile bud 1	0.229
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	1.382
	CRR073306	Third green 1	0.039
	CRR073307	Third green 2	0.221
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.050
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.272
	CRR073315	Gold flowering 1	0.656
	CRR073316	Gold flowering 2	0.888
	CRR073317	Gold flowering 3	1.509
	CRR073318	Tawny withering 1	23.824
	CRR073319	Tawny withering 2	4.061
	CRR073320	Tawny withering 3	26.479