Gene detail

Detail information of GWHGAAZE014085

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007017301.1	0	Mov34/MPN/PAD-1 family protein [Theobroma cacao]
Swissprot	tr\|Q9LT08\|PSDE_ARATH	3E-177	26S proteasome non-ATPase regulatory subunit 14 homolog
trEMBL	tr\|A0A061FBV8\|A0A061FBV8_THECC	0	Mov34/MPN/PAD-1 family protein {ECO:0000313\|EMBL:EOY14526.1}
TAIR10	AT5G23540.1	9E-127	Mov34/MPN/PAD-1 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	5365929	5369741	+
GWHAAZE00000004	mRNA	5365929	5369741	+
GWHAAZE00000004	exon	5365929	5366150	+
GWHAAZE00000004	exon	5366263	5366440	+
GWHAAZE00000004	exon	5366964	5367079	+
GWHAAZE00000004	exon	5367641	5367722	+
GWHAAZE00000004	exon	5368156	5368214	+
GWHAAZE00000004	exon	5368795	5368937	+
GWHAAZE00000004	exon	5369023	5369190	+
GWHAAZE00000004	exon	5369550	5369741	+
GWHAAZE00000004	five_prime_UTR	5365929	5366008	+
GWHAAZE00000004	CDS	5366009	5366150	+
GWHAAZE00000004	CDS	5366263	5366440	+
GWHAAZE00000004	CDS	5366964	5367079	+
GWHAAZE00000004	CDS	5367641	5367722	+
GWHAAZE00000004	CDS	5368156	5368214	+
GWHAAZE00000004	CDS	5368795	5368937	+
GWHAAZE00000004	CDS	5369023	5369190	+
GWHAAZE00000004	CDS	5369550	5369741	+

Transcript Sequence
>GWHTAAZE014099 GGAACAACAAATTTGAGCAATCTTGTTGTCAAAGAAATCCAATTTTCTAATCAGCTGAAGAGGGAAAGTAAAAAAGAACAATGTCGGGTATGGAGAGGTTGCAGAGAATGTTCGCCGGGGCCGGAGGAGCGTTGGGCCACCCCCCACCGGACTCCCCAACTCTCGATTCGTCGGAGCAAGTTTATATCTCTTCCCTAGCCCTCCTCAAGATGCTTAAGCACGGAAGAGCAGGAGTACCGATGGAAGTGATGGGATTGATGCTTGGGGAATTTGTGGATGAGTACACAGTTCGTGTAGTCGATGTCTTTGCAATGCCACAGAGTGGTACCGGTGTTAGTGTTGAAGCCGTTGATCATGTTTTTCAAACTAACATGCTTGATATGCTGAAACAAACTGGGAGCTTAGGTGCAGGGCAAAGAAGGCCTCCATCTGGGGAGGCCCGACCAATCAGTAAACTTACGGGCCAAGGGATAGTCTCAGGTAAACAGTTTCTACGGGGCGTAGGCCTCCCAAAAGGCCTGAAATGGTGGTTGGATGGTACCATTCTCATCCTGGATTTGGCTGCTGGCTATCTGGTGTCGACATCAATACTCAGCAGGGTTGAATTCGTGAAAAAGTTGGGGAATGGAATAAACAGAAGTTGGGGTATTCGATTAGTGGTGGTGGACCCAATCCAAAGTGTGAAAGGGAAGGTTGTGATTGATGCCTTTCGTTTGATCAACCCCCAAACTATGATGCTTGGCCAAGAGCCCCGCCAGACAACATCCAATCTTGGACATCTTAATAAACCATCCATCCAGGCATTAATCCATGGTTTGAACAGGCATTATTACTCAATAGCCATTAATTACCGAAAGAATGAACTTGAAGAGAAGATGCTACTCAACCTTCACAAAAAGAAATGGACCGATGGTTTGACACTTCAGCGATTTGATACCCATTCCAAAACGAATGAGCAGACTGTTCAGGAGATGCTAAATCTAGCAATCAAGTATAATAAGGCAGTACAGGAAGAGGATGAGTTGCCACCGGAGAAGCTGGCAATAGCAAATGTGGGAAGGCAAGATGCAAAGAAGCATCTAGAAGAGCATGTCTCCAACTTGATGTCTTCAAACATAATTCAAACTCTGGGAACCATGCTCGACACCGTTGTCTTTTAG

Network for GWHGAAZE014085

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	30	105	4.40E-14
PF13012.7	MitMem_reg	223	344	6.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03030	PSMD14, RPN11, POH1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.669
	SRR3591706	second leaf	26.956
	SRR3591707	mature leaf	21.591
	SRR3591708	Shoot apex	49.490
	SRR3591709	Stem	41.276
	SRR3591710	White floral bud	43.375
	SRR3591711	White flower	43.765
	SRR3591712	Green floral bud	53.399
	SRR3591713	Yellow flower	31.566
SRP173429	SRR8316895	Juvenile bud stage	3.440
	SRR8316896	Juvenile bud stage	4.468
	SRR8316897	Juvenile bud stage	2.554
	SRR8316894	Third green stage	3.290
	SRR8316900	Third green stage	6.435
	SRR8316901	Third green stage	5.503
	SRR8316898	Complete white stage	2.426
	SRR8316899	Complete white stage	6.849
	SRR8316903	Complete white stage	3.634
	SRR8316902	Silver flowering stage	2.715
	SRR8316904	Silver flowering stage	3.065
	SRR8316905	Silver flowering stage	1.162
	SRR8316906	Gold flowering stage	4.009
	SRR8316907	Gold flowering stage	3.811
	SRR8316908	Gold flowering stage	4.911
SRP132670	SRR6706286	Control	3.777
	SRR6706287	Light intensity 50%	4.313
	SRR6706288	Light intensity 20%	5.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.959
	CNS0095593	Slightly white alabastrum(diploid) 2	4.779
	CNS0095594	Slightly white alabastrum(diploid) 3	3.931
	CNS0095595	Whole white alabastrum(diploid) 2	4.170
	CNS0095596	Whole white alabastrum(diploid) 3	2.833
	CNS0095597	Whole white alabastrum(diploid) 4	3.826
	CNS0095598	Silvery flower (diploied) 1	4.658
	CNS0095599	Silvery flower (diploied) 2	3.948
	CNS0095600	Silvery flower (diploied) 3	2.503
	CNS0095601	Golden flower (diploid) 1	3.446
	CNS0095602	Golden flower (diploid) 2	2.695
	CNS0095603	Golden flower (diploid) 3	2.954
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.683
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.802
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.987
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.043
	CNS0095610	Silvery flower (tetraploid) 1	18.417
	CNS0095611	Silvery flower (tetraploid) 2	21.155
	CNS0095612	Silvery flower (tetraploid) 3	16.847
	CNS0095613	Golden flower (tetraploid) 1	12.824
	CNS0095614	Golden flower (tetraploid) 2	16.306
	CNS0095615	Golden flower (tetraploid) 3	13.204
CRA001975	CRR073297	Stem 1	5.007
	CRR073298	Stem 2	4.593
	CRR073299	Stem 3	1.710
	CRR073300	Leaf 1	5.994
	CRR073301	Leaf 2	5.287
	CRR073302	Leaf 3	0.910
	CRR073303	Juvenile bud 1	1.934
	CRR073304	Juvenile bud 2	0.524
	CRR073305	Juvenile bud 3	1.161
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.053
	CRR073308	Third green 3	0.039
	CRR073309	Second white 1	0.331
	CRR073310	Second white 2	1.201
	CRR073311	Second white 3	0.314
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.594
	CRR073315	Gold flowering 1	1.177
	CRR073316	Gold flowering 2	3.981
	CRR073317	Gold flowering 3	0.148
	CRR073318	Tawny withering 1	2.516
	CRR073319	Tawny withering 2	4.954
	CRR073320	Tawny withering 3	1.541