Detail information of GWHGAAZE014036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABC17856.10allene oxide synthase protein [Lonicera japonica]
Swissprottr|P48417|CP74_LINUS0Allene oxide synthase, chloroplastic (Precursor)
trEMBLtr|A1X873|A1X873_LONJA0Allene oxide synthase protein {ECO:0000313|EMBL:ABC17856.1}
TAIR10AT5G42650.18E-177allene oxide synthase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene47520524753635+
GWHAAZE00000004mRNA47520524753635+
GWHAAZE00000004exon47520524753635+
GWHAAZE00000004CDS47520524753635+
Transcript Sequence

Network for GWHGAAZE014036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00067.23p4503555022.40E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01723AOS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005506molecular_functioniron ion binding
GO:0016705molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037molecular_functionheme binding
GO:0004497molecular_functionmonooxygenase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf70.098
SRR3591706second leaf21.952
SRR3591707mature leaf18.852
SRR3591708Shoot apex39.853
SRR3591709Stem72.552
SRR3591710White floral bud89.239
SRR3591711White flower91.879
SRR3591712Green floral bud86.140
SRR3591713Yellow flower70.605
SRP173429 SRR8316895Juvenile bud stage 24.839
SRR8316896Juvenile bud stage 27.557
SRR8316897Juvenile bud stage 21.407
SRR8316894Third green stage 18.060
SRR8316900Third green stage 63.087
SRR8316901Third green stage 85.572
SRR8316898Complete white stage 37.060
SRR8316899Complete white stage 140.512
SRR8316903Complete white stage 75.410
SRR8316902Silver flowering stage54.463
SRR8316904Silver flowering stage66.775
SRR8316905Silver flowering stage39.345
SRR8316906Gold flowering stage 140.740
SRR8316907Gold flowering stage 135.669
SRR8316908Gold flowering stage 180.702
SRP132670SRR6706286Control75.663
SRR6706287Light intensity 50%84.411
SRR6706288Light intensity 20%93.632
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.314
CNS0095593Slightly white alabastrum(diploid) 244.685
CNS0095594Slightly white alabastrum(diploid) 341.350
CNS0095595Whole white alabastrum(diploid) 232.972
CNS0095596Whole white alabastrum(diploid) 318.581
CNS0095597Whole white alabastrum(diploid) 429.051
CNS0095598Silvery flower (diploied) 140.448
CNS0095599Silvery flower (diploied) 236.162
CNS0095600Silvery flower (diploied) 367.559
CNS0095601Golden flower (diploid) 144.539
CNS0095602Golden flower (diploid) 272.144
CNS0095603Golden flower (diploid) 371.957
CNS0095604Slightly white alabastrum(tetraploid) 130.735
CNS0095605Slightly white alabastrum(tetraploid) 222.426
CNS0095606Slightly white alabastrum(tetraploid) 366.844
CNS0095607Whole white alabastrum(tetraploid) 127.539
CNS0095608Whole white alabastrum(tetraploid) 223.226
CNS0095609Whole white alabastrum(tetraploid) 337.499
CNS0095610Silvery flower (tetraploid) 156.827
CNS0095611Silvery flower (tetraploid) 256.934
CNS0095612Silvery flower (tetraploid) 3108.271
CNS0095613Golden flower (tetraploid) 135.962
CNS0095614Golden flower (tetraploid) 245.512
CNS0095615Golden flower (tetraploid) 343.407
CRA001975CRR073297Stem 1103.331
CRR073298Stem 2107.634
CRR073299Stem 3103.300
CRR073300Leaf 1166.578
CRR073301Leaf 2121.570
CRR073302Leaf 3137.861
CRR073303Juvenile bud 1161.532
CRR073304Juvenile bud 2276.274
CRR073305Juvenile bud 3213.370
CRR073306Third green 1140.614
CRR073307Third green 299.998
CRR073308Third green 3126.539
CRR073309Second white 1132.822
CRR073310Second white 298.918
CRR073311Second white 399.622
CRR073312Silver flowering 195.176
CRR073313Silver flowering 288.015
CRR073314Silver flowering 394.365
CRR073315Gold flowering 113.164
CRR073316Gold flowering 248.668
CRR073317Gold flowering 352.826
CRR073318Tawny withering 165.638
CRR073319Tawny withering 2265.030
CRR073320Tawny withering 340.014