Gene detail

Detail information of GWHGAAZE014028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP38456.1	1.3409E-103	hypothetical protein JCGZ_04381 [Jatropha curcas]
Swissprot	tr\|O22808\|LYK5_ARATH	3E-55	Protein LYK5 (Precursor)
trEMBL	tr\|A0A067KQG2\|A0A067KQG2_JATCU	5E-104	Uncharacterized protein {ECO:0000313\|EMBL:KDP38456.1}
TAIR10	AT2G33580.1	7E-50	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4630448	4632031	+
GWHAAZE00000004	mRNA	4630448	4632031	+
GWHAAZE00000004	exon	4630448	4630825	+
GWHAAZE00000004	exon	4631204	4632031	+
GWHAAZE00000004	CDS	4630448	4630825	+
GWHAAZE00000004	CDS	4631204	4632031	+

Transcript Sequence
>GWHTAAZE014042 TTCCTTAACACTTGTAATGGCCAAAACTCAACTTGCAAAGCTTTCATCATCTTCAAATCTCAACCTCCTTATAATTCAGTTTCCTCTATATCCACTATCACGTCCTCAGGCCCACTGGAGCTGGCTCAAATCAATAATGCCAGAACATTTACGATTTTTCCAGTAGACAAAGAGGTTATTATTCCAGTGAACTGCTCTTGCTCAGGTCGGTACTATCAAGCCAATGCTACGTTCGAAATTCCAGCCTCAACACAAACCTATTTAACTGTAGCAAACAACACCTACCAAGGCTTATCAACCTGCGATTCCCTCAAGCGTGCAAATCCCCATGATGAGTTTGATTTGCAGGCCAGTTTGCATTTGCCTACCCTCTTAGATAAGAGACCAAAGGGGATTTTCAAGAGCAATGGAAAAGGCAAGTCAAAAGGAGCACTGCAAGAAGACCTACTAGTCGAAATTGCTAGTTTTGATCAATCTCTCAAAGTTTTTAGCTTCGACAAACTAAAGAAGGCCACAGAAAATTTTGGTTTGAAGAGTAAGATAGGAGGTTCTGTGTATCAGGGAGCGTTTTCCGGGGAAGTTCTTGCTGTTAAAAAGATGAGTATAGATGTATCCAGAGAGGTGAAGATGCTTAACAAGATCAACCACTTCAATTTGATAAACCTCCAAGGGGTGTGCAAACACAACGGCTGTTTCAACCTCATTTATGAATCCATGAAAAATGGTCCCCAAAGAGAATGGCTCTGCAAGAAAAAGCCCGAAGGCACTGATGAGTGGCCCCATCGGATTTGGATTGCCTTGGATGTCGCTAATGGGCTCCACTATCTCCATAACTTCACCGAACCGGCTTGCATTCACAAGGATATCAAGAGCAGCAATATTCTTCTAGATGCCAATTTAAGAGCAAAGATTGCAAATTTCAGTCTTGCAAGTACAGCAATAACCGAGGGGACAGATACTAAAGCCCTAACAACGAGGATAGTGGGGACCAGAGGTTATATGGCCCCTGAGTATATAGAGATGGGGGCATTGGCTTCTAAAACGGATGTCTATGCTTTTGGAGTGGTGATGTTGGAATTTATTACTGGAAAAGAAGCTGTGATTATACAAGAAAGTCGAGAAGTACTGTTAACGGCTGTGATTGCTTCCATCATGGAGGGGAAAATGTACAAACGGAGCTTAGGTACTTTATTGACACCAGTCTAG

Network for GWHGAAZE014028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	201	368	1.40E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.477
	SRR3591706	second leaf	0.316
	SRR3591707	mature leaf	0.212
	SRR3591708	Shoot apex	0.502
	SRR3591709	Stem	0.365
	SRR3591710	White floral bud	0.361
	SRR3591711	White flower	0.835
	SRR3591712	Green floral bud	0.323
	SRR3591713	Yellow flower	1.302
SRP173429	SRR8316895	Juvenile bud stage	0.827
	SRR8316896	Juvenile bud stage	0.998
	SRR8316897	Juvenile bud stage	0.315
	SRR8316894	Third green stage	0.324
	SRR8316900	Third green stage	0.292
	SRR8316901	Third green stage	0.198
	SRR8316898	Complete white stage	0.278
	SRR8316899	Complete white stage	0.316
	SRR8316903	Complete white stage	0.138
	SRR8316902	Silver flowering stage	0.112
	SRR8316904	Silver flowering stage	0.288
	SRR8316905	Silver flowering stage	0.166
	SRR8316906	Gold flowering stage	0.472
	SRR8316907	Gold flowering stage	0.317
	SRR8316908	Gold flowering stage	1.098
SRP132670	SRR6706286	Control	0.272
	SRR6706287	Light intensity 50%	0.209
	SRR6706288	Light intensity 20%	0.173
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.829
	CNS0095593	Slightly white alabastrum(diploid) 2	0.396
	CNS0095594	Slightly white alabastrum(diploid) 3	0.674
	CNS0095595	Whole white alabastrum(diploid) 2	0.313
	CNS0095596	Whole white alabastrum(diploid) 3	0.067
	CNS0095597	Whole white alabastrum(diploid) 4	0.443
	CNS0095598	Silvery flower (diploied) 1	0.977
	CNS0095599	Silvery flower (diploied) 2	0.206
	CNS0095600	Silvery flower (diploied) 3	0.277
	CNS0095601	Golden flower (diploid) 1	0.261
	CNS0095602	Golden flower (diploid) 2	0.336
	CNS0095603	Golden flower (diploid) 3	0.356
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.232
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.128
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.056
	CNS0095610	Silvery flower (tetraploid) 1	0.442
	CNS0095611	Silvery flower (tetraploid) 2	0.044
	CNS0095612	Silvery flower (tetraploid) 3	0.131
	CNS0095613	Golden flower (tetraploid) 1	0.229
	CNS0095614	Golden flower (tetraploid) 2	0.373
	CNS0095615	Golden flower (tetraploid) 3	0.177
CRA001975	CRR073297	Stem 1	0.164
	CRR073298	Stem 2	0.278
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.166
	CRR073301	Leaf 2	0.633
	CRR073302	Leaf 3	0.067
	CRR073303	Juvenile bud 1	0.109
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.109
	CRR073306	Third green 1	0.024
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.066
	CRR073317	Gold flowering 3	0.049
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.242
	CRR073320	Tawny withering 3	0.048