Gene detail

Detail information of GWHGAAZE014024

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281880.2	1.92477E-81	PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
Swissprot	tr\|O22808\|LYK5_ARATH	1E-47	Protein LYK5 (Precursor)
trEMBL	tr\|A0A067KQG2\|A0A067KQG2_JATCU	3E-81	Uncharacterized protein {ECO:0000313\|EMBL:KDP38456.1}
TAIR10	AT2G33580.1	7E-42	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4600714	4601349	+
GWHAAZE00000004	mRNA	4600714	4601349	+
GWHAAZE00000004	exon	4600714	4601349	+
GWHAAZE00000004	CDS	4600714	4601349	+

Transcript Sequence
>GWHTAAZE014038 ATGAAAAATGGTTCCCTAAGAGAATGGCTCTGCAAGAAAAAGCCCGAAGGCACTAATGAGTGGACCCATCGGATTTGGATTGCCTTGGACGTCGCTAATGGGCTCCACTATCTCCATAACTTCACCGAACCGGCTTGCATTCACAAGGATATCAAGAGCAGCAATATTCTTCTAGATGCCAATTTAAGAGCAAAGATTGCAAATTTCAGTCTTGCAAGTACAGCAATAACCGAGGGGACAGATACTAAAGCCCTAACAACGAGGATACTGGGGACCAGAGGTTATATGGCGCCCGAGTATATAGAGATGGGGGAATTGGCTCCTAAAACAGATGTCTATGCTTTTGGAGTGGTGATGTTGGAACTTATTACAGGAAAAGAAGCTGCGATTATACAAGAAGGTCGAGAAGTACTGTTAACGGCTGTGATTGCTTCCATCATGGAGGGGAAGAATGTACAAACGGAGCTTAGGTACTTTATTGACCCCTGTCTAGGAGAAAATAAGATGAAACATGTGGTAGGTGTGGTAAAATTAAGCCTAAAGTGCTTGAGGCGAGATGCAACAAGTAGACCGAGCATGAGTGACGTGGCGTCAACTCTGGTGAAGATTCAGATTGATTTAGAAAATTCAGATTGA

Network for GWHGAAZE014024

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	1	196	7.40E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.561
	SRR3591706	second leaf	1.408
	SRR3591707	mature leaf	0.796
	SRR3591708	Shoot apex	0.973
	SRR3591709	Stem	2.393
	SRR3591710	White floral bud	1.543
	SRR3591711	White flower	1.294
	SRR3591712	Green floral bud	0.574
	SRR3591713	Yellow flower	1.657
SRP173429	SRR8316895	Juvenile bud stage	1.435
	SRR8316896	Juvenile bud stage	0.921
	SRR8316897	Juvenile bud stage	0.896
	SRR8316894	Third green stage	0.408
	SRR8316900	Third green stage	0.714
	SRR8316901	Third green stage	1.266
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.543
	SRR8316903	Complete white stage	0.689
	SRR8316902	Silver flowering stage	0.231
	SRR8316904	Silver flowering stage	1.179
	SRR8316905	Silver flowering stage	0.178
	SRR8316906	Gold flowering stage	0.632
	SRR8316907	Gold flowering stage	0.182
	SRR8316908	Gold flowering stage	0.603
SRP132670	SRR6706286	Control	1.560
	SRR6706287	Light intensity 50%	1.584
	SRR6706288	Light intensity 20%	1.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.749
	CNS0095593	Slightly white alabastrum(diploid) 2	0.230
	CNS0095594	Slightly white alabastrum(diploid) 3	0.556
	CNS0095595	Whole white alabastrum(diploid) 2	0.305
	CNS0095596	Whole white alabastrum(diploid) 3	0.153
	CNS0095597	Whole white alabastrum(diploid) 4	0.402
	CNS0095598	Silvery flower (diploied) 1	0.820
	CNS0095599	Silvery flower (diploied) 2	0.427
	CNS0095600	Silvery flower (diploied) 3	0.830
	CNS0095601	Golden flower (diploid) 1	1.453
	CNS0095602	Golden flower (diploid) 2	1.815
	CNS0095603	Golden flower (diploid) 3	1.114
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.053
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.498
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.416
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.880
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.587
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.419
	CNS0095610	Silvery flower (tetraploid) 1	1.439
	CNS0095611	Silvery flower (tetraploid) 2	1.800
	CNS0095612	Silvery flower (tetraploid) 3	1.490
	CNS0095613	Golden flower (tetraploid) 1	0.832
	CNS0095614	Golden flower (tetraploid) 2	1.135
	CNS0095615	Golden flower (tetraploid) 3	1.279
CRA001975	CRR073297	Stem 1	1.526
	CRR073298	Stem 2	0.935
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.304
	CRR073301	Leaf 2	1.184
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.282
	CRR073306	Third green 1	0.210
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.230
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.575
	CRR073319	Tawny withering 2	0.270
	CRR073320	Tawny withering 3	0.000