Gene detail

Detail information of GWHGAAZE014000

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282958.2	PREDICTED: probable serine/threonine protein kinase IRE4 isoform X1 [Vitis vinifera]
Swissprot	tr\|F4HPN2\|IRE4_ARATH	Probable serine/threonine protein kinase IRE4 {ECO:0000305}
trEMBL	tr\|F6H1H6\|F6H1H6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45935.1}
TAIR10	AT1G45160.2	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4229743	4240105	+
GWHAAZE00000004	mRNA	4229743	4240105	+
GWHAAZE00000004	exon	4229743	4230081	+
GWHAAZE00000004	exon	4231484	4231578	+
GWHAAZE00000004	exon	4231699	4231911	+
GWHAAZE00000004	exon	4232510	4233751	+
GWHAAZE00000004	exon	4234272	4234444	+
GWHAAZE00000004	exon	4234540	4234783	+
GWHAAZE00000004	exon	4236018	4236110	+
GWHAAZE00000004	exon	4236356	4236496	+
GWHAAZE00000004	exon	4236575	4236667	+
GWHAAZE00000004	exon	4237263	4237455	+
GWHAAZE00000004	exon	4237531	4237616	+
GWHAAZE00000004	exon	4238003	4238091	+
GWHAAZE00000004	exon	4238381	4238432	+
GWHAAZE00000004	exon	4238594	4238650	+
GWHAAZE00000004	exon	4238999	4239148	+
GWHAAZE00000004	exon	4239647	4239724	+
GWHAAZE00000004	exon	4240007	4240105	+
GWHAAZE00000004	five_prime_UTR	4229743	4229849	+
GWHAAZE00000004	CDS	4229850	4230081	+
GWHAAZE00000004	CDS	4231484	4231578	+
GWHAAZE00000004	CDS	4231699	4231911	+
GWHAAZE00000004	CDS	4232510	4233751	+
GWHAAZE00000004	CDS	4234272	4234444	+
GWHAAZE00000004	CDS	4234540	4234783	+
GWHAAZE00000004	CDS	4236018	4236110	+
GWHAAZE00000004	CDS	4236356	4236496	+
GWHAAZE00000004	CDS	4236575	4236667	+
GWHAAZE00000004	CDS	4237263	4237455	+
GWHAAZE00000004	CDS	4237531	4237616	+
GWHAAZE00000004	CDS	4238003	4238091	+
GWHAAZE00000004	CDS	4238381	4238432	+
GWHAAZE00000004	CDS	4238594	4238650	+
GWHAAZE00000004	CDS	4238999	4239148	+
GWHAAZE00000004	CDS	4239647	4239724	+
GWHAAZE00000004	CDS	4240007	4240105	+

Transcript Sequence
>GWHTAAZE014014 TCACATTGAGTTCGTTAATCACATACGTATTTCACTTCCTTCTATAACAAAGAAACTTATTAGGGTTTTGTTTCACGTTTTTTGATGTGAAAAGAAAAGTATACGTGATGGTAGAAACAACTAAAAACGTCGGAGAATCTTCGACCGACGCCGATATTCCGACCGGCTTGAATCGAATAAAGACTCGTATAGTGTCGTCGAAGGATAATCAGAGCTCAAAACTTGATCATTCCAATAACTTAGTTGATTCTCGTAGTTTGGGAAGTTCAAGGACTCTTTTGAAGCAGAAGCAGAGATCGTCGGTTCAAGGACAAGTAAACGGCAATGGTTCTAAAGAAGGAATCCATAAAGGAAGGAAGATTGCTCAGTGGTTCAGATCACATCTCTTCAAGGATCCTGATGAAGATTTTGGTGATATTTCTCCAAACACAAATCATAGTGACCCCAAAGTCAAGGCACTTGACAAGGACTTTCGTGCAAGAAAATTTTCCAAGGTGGGGAAGAACTCTGCTGGAAAAAGATCTTCATTGCAAAGCACGAGCAGTAGTACATTGCCAAAGGGCTTAAAAAGTTTCTCTCATGAATTGGGACCAAAAGGTGGCATTCGACCTGTACAACTTCGCGCTCACAGCTTTAATGATTTGAAGGAGCTTCTGGGAGCATTGCGTTCAAGATTTGATGCTGCAAAACAAGTCGTCAACACAGAACTGGCCTGTTTCATGCGGGAGGTGATGGAGATCTTTCAGAAGAGTGACTCATTGTCTCTAGAAGGACAGAAAATAACAGAGGATCTTCTAATTCTGGCCCAAAAATGTATCGAAATGACATCCTTGGATTTTCGTACCAAGTGTGAGACAATTGTCCAAGATTTGACAGAGAAGAGACGCCTATGCCAAACAGGATTGCTGAAGTGGCTATTGACACGCATGCTTTTCATTTTGACACGTTGCACTAGGTTGTTGCATTTTGAGAAAGACAGTGAACCAATTGATGAGAAATCCCTTTATAAATTCAAGGAATGTTTAGAAAGCATACCTTCTTTTGAAAACTGGGTCCTAAATCCAGAGAGTGCTGATTCTGATACCAGCTATGCTTTGAATAAGTACGAAACCAAACACAAATTGCAGGGACAAAATCAGGCACCTACTCCCCCTCAAGCAACCTGGTGCAAGTCTGAAGTGTCAGATAAGGGGAGTAACACAAGTCTTAGAAAGGATTTCATGGTTAACAAAAAAATGGCATCCTCTCAAAATTCCCAAATTGATAGTCCTTCAAATTCTCAAGAAGTTGATGATCATTATCTTGAAGAATCAATAAACAAGCATGGCTGTGGTTCACTTCAAGAGCAGGGACAAACTTCAGATGGTTCTGATCTAGTAATCTGTAGGATATGTGAGGAACTTGTTCCTGCTACTCATTTGGAGTATCACTCCTATATATGTGCTTATGCAGATAAATGTGATTTGACATGTTCAGATGTAGATGAGCGCCTTTTGAAATTCGCAGAGATACTTGAACAGATCATTGAGTCACGGAATCTTAGTTTCCATGCAACATATGATAGTCCTGAAAATTCAAGGATGCAGACTTCAAATTCTTCGATTGCATCAGAAGGTTGTTCTCCAAAGATAAGTGAGTGGCGAAGTAAAGGCGTGGAAGGAATGTTTGAGGATCTTCATGAGATGGACACTGCCTCCATGGAAGATTCTCATTTTGCAACCTTTGCTAATTTGAGGGCCCACTTGGGCAGCAAGCTTGGCCACTGTGGGCCACCTTCTTCGGCCGGGAGCGTGACATCAGCATCCTCCACAAATACCCCTAAAGCTGGAAACTTTGACTTCTTTTGGTTAGAGGATAACAATCCATCTGAAGTAGAGGATGTACAACAGATGAATGACCTTGTGGAAATTGCTCGCTGTGTGGCAATTACAGATATTTCAGAAGAAGGGTCCCATGAGTTATTACTTGCTTGCATGCGAGACTTACAGGATGTTTTACGACGTAGTAAGCTCAAAGCTCTTGTTATAGACACATTTGGAGGCCGGTTAGAGAATCTTCTGCGAGAGAAGTACATACTTGCTTGTGAACAAGTGGACACAAAAACTTTAAAGAGTGATATTAGATATCCTGATAGCTGCAATTCTTTCCTGGATAATGCATCTCAAAGTAGTACAATGTCAACTCCTTTACACAAAGAACGAACGAACATTGAAGACTTTGAGATTATTAAACCAATCAGCAGAGGCGCTTATGGTAAAGTGTTTCTTGCACGAAAGAGAACAACAGGGGATTTATTTGCAATAAAGGTGCTCAAGAAACTGGACATGTTAAGGAAAAATGACATCGAACGTATAGTGGCAGAGCGCAATATATTGATAACAGTTCGAAACCCTTTTGTGGTTCGATTTTTTTATTCATTTACCAGTAAAGACAACCTTTATTTGGTTATGGAGTATCTCAATGGAGGCGATCTATACTCTTTACTCAAAAAAGTCGGTTGCCTTGAGGAAGATGTAGCACGTATCTATATGGCAGAACTGGTTCTTGCTCTAGAATACCTTCATTCTCTAGGAATTGTGCATCGTGATCTGAAACCCGACAATATATTAATTGCGCACGATGGCCATATTAAGCTTACAGACTTTGGCTTATCAAAAATTGGCCTTATGAACAGCACAGACGATTTATCTGGACCCGAGACAAATGGAATTACACTTTTAGATGCCCACAGCCAGCAGAATACACAAAGTTTGGACAGAAGTCAGCGGTCAGCTGTTGGCACACCGGACTACTTGGCACCAGAAATCCTTCTTGGAACTGAGCATGGTTATGCTGCAGACTGGTGGTCTGTGGGAATTATTCTATTTGAATTTATTACCGGAATCCCGCCTTTCACTGCTGAACATCCAGAGATAATCTTTGACAACATTCTTAACAGGAAAATCCCCTGGCCTACTGTTCCCAATGATATGTCCTATGATGCCCAAGATTTGATTGACAGGTTTCTTATTCATGATCCCAATCAGCGCCTCGGAGCAGAGGGATCATCAGAGGTAAAAGCACATCCTTTTTTCAGGGGAGTTAACTGGGATACTCTTGCATTACAAAAGGCCGCCTTTGTACCCCACCCCAACAGTGTAGATGATACAAGCTATTTTGTGCCACGGTATACCAACAATTCAACTGGAATGCCAGATGAACCTGACTCTAGTGATTCATCTTCTGATACTACAGACTCGTTTTCAAATTCTGGACTTGAGAAGATGGATGAGTGTAAGGATCTTGATGAGTTTGATTCTTCACCCTTGGATCTGTCCTTGATGAATTTTTCATTCAAGAATTTGTCACAGTTGGCATCCATCAACCGCGATGTGCTTTTACAGAGTGGGAAGGATCAAACACAATCCTCATCTCCATACAAGGCTTTAAGTCCGTAG

Network for GWHGAAZE014000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	704	989	3.90E-66

Protein Sequence

>GWHPAAZE014007
MVETTKNVGESSTDADIPTGLNRIKTRIVSSKDNQSSKLDHSNNLVDSRSLGSSRTLLKQKQRSSVQGQVNGNGSKEGIHKGRKIAQWFRSHLFKDPDEDFGDISPNTNHSDPKVKALDKDFRARKFSKVGKNSAGKRSSLQSTSSSTLPKGLKSFSHELGPKGGIRPVQLRAHSFNDLKELLGALRSRFDAAKQVVNTELACFMREVMEIFQKSDSLSLEGQKITEDLLILAQKCIEMTSLDFRTKCETIVQDLTEKRRLCQTGLLKWLLTRMLFILTRCTRLLHFEKDSEPIDEKSLYKFKECLESIPSFENWVLNPESADSDTSYALNKYETKHKLQGQNQAPTPPQATWCKSEVSDKGSNTSLRKDFMVNKKMASSQNSQIDSPSNSQEVDDHYLEESINKHGCGSLQEQGQTSDGSDLVICRICEELVPATHLEYHSYICAYADKCDLTCSDVDERLLKFAEILEQIIESRNLSFHATYDSPENSRMQTSNSSIASEGCSPKISEWRSKGVEGMFEDLHEMDTASMEDSHFATFANLRAHLGSKLGHCGPPSSAGSVTSASSTNTPKAGNFDFFWLEDNNPSEVEDVQQMNDLVEIARCVAITDISEEGSHELLLACMRDLQDVLRRSKLKALVIDTFGGRLENLLREKYILACEQVDTKTLKSDIRYPDSCNSFLDNASQSSTMSTPLHKERTNIEDFEIIKPISRGAYGKVFLARKRTTGDLFAIKVLKKLDMLRKNDIERIVAERNILITVRNPFVVRFFYSFTSKDNLYLVMEYLNGGDLYSLLKKVGCLEEDVARIYMAELVLALEYLHSLGIVHRDLKPDNILIAHDGHIKLTDFGLSKIGLMNSTDDLSGPETNGITLLDAHSQQNTQSLDRSQRSAVGTPDYLAPEILLGTEHGYAADWWSVGIILFEFITGIPPFTAEHPEIIFDNILNRKIPWPTVPNDMSYDAQDLIDRFLIHDPNQRLGAEGSSEVKAHPFFRGVNWDTLALQKAAFVPHPNSVDDTSYFVPRYTNNSTGMPDEPDSSDSSSDTTDSFSNSGLEKMDECKDLDEFDSSPLDLSLMNFSFKNLSQLASINRDVLLQSGKDQTQSSSPYKALSP

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_MAST

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.078
	SRR3591706	second leaf	8.197
	SRR3591707	mature leaf	27.671
	SRR3591708	Shoot apex	7.491
	SRR3591709	Stem	16.886
	SRR3591710	White floral bud	20.515
	SRR3591711	White flower	24.180
	SRR3591712	Green floral bud	13.074
	SRR3591713	Yellow flower	27.933
SRP173429	SRR8316895	Juvenile bud stage	6.511
	SRR8316896	Juvenile bud stage	9.512
	SRR8316897	Juvenile bud stage	4.560
	SRR8316894	Third green stage	4.695
	SRR8316900	Third green stage	10.929
	SRR8316901	Third green stage	9.291
	SRR8316898	Complete white stage	5.669
	SRR8316899	Complete white stage	13.459
	SRR8316903	Complete white stage	9.963
	SRR8316902	Silver flowering stage	6.036
	SRR8316904	Silver flowering stage	11.662
	SRR8316905	Silver flowering stage	5.021
	SRR8316906	Gold flowering stage	17.503
	SRR8316907	Gold flowering stage	15.482
	SRR8316908	Gold flowering stage	16.807
SRP132670	SRR6706286	Control	12.087
	SRR6706287	Light intensity 50%	10.486
	SRR6706288	Light intensity 20%	11.300
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.521
	CNS0095593	Slightly white alabastrum(diploid) 2	4.524
	CNS0095594	Slightly white alabastrum(diploid) 3	5.119
	CNS0095595	Whole white alabastrum(diploid) 2	4.701
	CNS0095596	Whole white alabastrum(diploid) 3	3.485
	CNS0095597	Whole white alabastrum(diploid) 4	3.859
	CNS0095598	Silvery flower (diploied) 1	11.694
	CNS0095599	Silvery flower (diploied) 2	7.662
	CNS0095600	Silvery flower (diploied) 3	15.773
	CNS0095601	Golden flower (diploid) 1	9.460
	CNS0095602	Golden flower (diploid) 2	22.144
	CNS0095603	Golden flower (diploid) 3	20.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.668
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.033
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.313
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.884
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.243
	CNS0095610	Silvery flower (tetraploid) 1	22.195
	CNS0095611	Silvery flower (tetraploid) 2	17.718
	CNS0095612	Silvery flower (tetraploid) 3	13.173
	CNS0095613	Golden flower (tetraploid) 1	12.093
	CNS0095614	Golden flower (tetraploid) 2	22.538
	CNS0095615	Golden flower (tetraploid) 3	21.494
CRA001975	CRR073297	Stem 1	6.681
	CRR073298	Stem 2	6.147
	CRR073299	Stem 3	4.775
	CRR073300	Leaf 1	6.345
	CRR073301	Leaf 2	5.743
	CRR073302	Leaf 3	2.606
	CRR073303	Juvenile bud 1	4.186
	CRR073304	Juvenile bud 2	3.464
	CRR073305	Juvenile bud 3	5.464
	CRR073306	Third green 1	2.102
	CRR073307	Third green 2	1.573
	CRR073308	Third green 3	2.427
	CRR073309	Second white 1	1.404
	CRR073310	Second white 2	2.502
	CRR073311	Second white 3	3.485
	CRR073312	Silver flowering 1	2.150
	CRR073313	Silver flowering 2	2.065
	CRR073314	Silver flowering 3	2.328
	CRR073315	Gold flowering 1	3.767
	CRR073316	Gold flowering 2	7.773
	CRR073317	Gold flowering 3	1.750
	CRR073318	Tawny withering 1	4.118
	CRR073319	Tawny withering 2	4.097
	CRR073320	Tawny withering 3	3.521