Gene detail

Detail information of GWHGAAZE013989

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP38500.1	hypothetical protein JCGZ_04425 [Jatropha curcas]
Swissprot	tr\|Q8RXN5\|TYW1_ARATH	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
trEMBL	tr\|A0A067L1Y3\|A0A067L1Y3_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP38500.1}
TAIR10	AT1G75200.1	flavodoxin family protein / radical SAM domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4019376	4024526	+
GWHAAZE00000004	mRNA	4019376	4024526	+
GWHAAZE00000004	exon	4019376	4020239	+
GWHAAZE00000004	exon	4021132	4021247	+
GWHAAZE00000004	exon	4022678	4022853	+
GWHAAZE00000004	exon	4023277	4023467	+
GWHAAZE00000004	exon	4023557	4023643	+
GWHAAZE00000004	exon	4023796	4023953	+
GWHAAZE00000004	exon	4024044	4024254	+
GWHAAZE00000004	exon	4024383	4024526	+
GWHAAZE00000004	CDS	4019376	4020239	+
GWHAAZE00000004	CDS	4021132	4021247	+
GWHAAZE00000004	CDS	4022678	4022853	+
GWHAAZE00000004	CDS	4023277	4023467	+
GWHAAZE00000004	CDS	4023557	4023643	+
GWHAAZE00000004	CDS	4023796	4023953	+
GWHAAZE00000004	CDS	4024044	4024254	+
GWHAAZE00000004	CDS	4024383	4024526	+

Transcript Sequence
>GWHTAAZE014003 ATGTCCTCCTCCTCCTCATCCTCCTCCGTCGCAATACGTCTGAGTCTCCTGGCCTTCCTCTCCGCCACCACTATCTACTTCCTCTACAAATCCCAATCCCGCCGCCTCAAAAAACTCTCCTCCTCCTCAATCCCTTCTACTTCCAATCCCAGGGGCAAACTCTTCTTCGTCTCCCAAACAGGCACTTCCAAAACCCTAGCTCTACGCCTCTTCAATCTATTAACCTCCAACAACCTCCCATTCGACCTCGTCGACCCCAAGGATTACGAGCCCGAAGACCTCCACAAAGAAACCCTAGTTTTAATCGTCTCTTCTACCTGGGAAGACGGTAAGCCCCCTCCTAACGGCGGTTTCTTCGCAAACTGGCTCGCCGAGAGCTCAGATGACTTTAGGGTTGGCTCACTCCTCCTTAATAGCTGTAAATTTGCTGTCTTTGGTGTTGGAAGCCGATCCTATGGTGCTTCTTTCAATGCTGTTGCTAGAGATTTCTCCAAACGGATGCGAGCCCTTGGGGCTGTTGAGGTGTTGCCGCTGTGTGAAGGGGATGTTGATGGAGCTGAGCTTGATGAGGCGTTTGATTTTTGGAGTAGCAAGGTGATTGAGGCTTTGAAAGGTAATCCGGAGGGAAACGGGGGTTTTGTAGGTGGTGTCAATGGGGATGATAGTGAGGAAGAGACGTTTGATGGGTCGGATGATGATGATGAAGAGGAAAACAATGGGTTAGATTCGGGGGTTGTTGATCTGGAGGATATCGCAGGCAAATTTGCTTCAAGGAAATCGGGGGTGGAGACCAAATCTAATGGGAAATTGAATGGCGAAAAAGAAATGGTGACTCCGGTAATTAGAGCCAGCTTAGAGAAGCAGGGATATAAAATTATTGGTTCACATAGTGGTGTTAAAATTTGTAGATGGACCAAGTCTCAACTTAGAGGACGAGGAGGTTGTTACAAGCATTCCTTTTATGGCATTGAGAGTCACAGGTGCATGGAAACAACTCCTAGTCTGGCATGTGCCAACAAATGTGTTTTCTGTTGGAGACACCACACAAATCCTGTAGGAAAGAGTTGGCAATGGAAGATGGATGATCCTCTCGTGATTGTAAATTCTGCCATAGACCTACATACGAAAATGATAAAGCAAATGAAAGGTGTTCCAGGTGTTAAAACAGAGCGCCTTGTAGAAGGTCTTTCCCCTAGGCACTGTGCCTTATCACTTGTTGGTGAACCAATCATGTATCCGGAGATTAATGCACTTGTAGATGAGCTACACCAGAGGCGTATTTCTACTTTTCTCGTAACAAATGCACAGTTCCCTGATAAGATTAAGTTGCTGAAACCTGTGACCCAGTTATATGTTAGTGTAGATGCTGCTACAAAGGATAGTTTGAAGGCAATTGATAGGCCACTTTTCGGGGACTTTTGGGAGCGATTTGTTGATTCTTTGAAGGCTCTGAAGGAGAAGAAGCAGCGAACTGTTTACCGCTTAACACTCGTTAAAGGGTGGAATACGGAGGACATAGAAGCGTATTCTAACCTCTTTGACATTGGAAATCCTGATTTCATTGAAATCAAAGGCGTCACCTATTGTGGATCGTCTGCTACGTCGAAGCTAACAATGGAGAATGTGCCCTGGCATGCTGACGTGACAGCATTTTCTGAGGCCTTAGCAGAAAAAAGCAAAGGGGAGTACGAGGTTGCTTGCGAGCATGTCCACTCATGTTGTGTTCTTCTTGCAAAAGTTGATAAGTTTAAGATCAACGGTGAATGGTTCACTTGGATAGACTACGATAAATTCCATGACCTGGTGGCTGCTGGAAAACCTTTTGACAGCAAGGACTACATGGCTCCCTCACCATCTTGGACTGTATACGGTGCAGAGGAAGGTGGATTTGATCCAGCGCAAGCTAGGTTTAGGAAGGAGCGGCATCATAATAAATCAAATGACTGA

Network for GWHGAAZE013989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00258.26	Flavodoxin_1	54	195	3.30E-26
PF04055.22	Radical_SAM	332	511	2.40E-25
PF08608.13	Wyosine_form	516	579	2.70E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008033	biological_process	tRNA processing
GO:0003824	molecular_function	catalytic activity
GO:0010181	molecular_function	FMN binding
GO:0051536	molecular_function	iron-sulfur cluster binding
GO:0051539	molecular_function	4 iron, 4 sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.007
	SRR3591706	second leaf	15.630
	SRR3591707	mature leaf	9.417
	SRR3591708	Shoot apex	24.395
	SRR3591709	Stem	15.796
	SRR3591710	White floral bud	19.923
	SRR3591711	White flower	28.271
	SRR3591712	Green floral bud	26.222
	SRR3591713	Yellow flower	19.809
SRP173429	SRR8316895	Juvenile bud stage	15.468
	SRR8316896	Juvenile bud stage	23.630
	SRR8316897	Juvenile bud stage	12.813
	SRR8316894	Third green stage	8.961
	SRR8316900	Third green stage	24.457
	SRR8316901	Third green stage	22.393
	SRR8316898	Complete white stage	4.554
	SRR8316899	Complete white stage	19.648
	SRR8316903	Complete white stage	10.002
	SRR8316902	Silver flowering stage	6.755
	SRR8316904	Silver flowering stage	10.219
	SRR8316905	Silver flowering stage	4.266
	SRR8316906	Gold flowering stage	13.123
	SRR8316907	Gold flowering stage	15.253
	SRR8316908	Gold flowering stage	14.666
SRP132670	SRR6706286	Control	23.657
	SRR6706287	Light intensity 50%	22.803
	SRR6706288	Light intensity 20%	23.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.928
	CNS0095593	Slightly white alabastrum(diploid) 2	16.700
	CNS0095594	Slightly white alabastrum(diploid) 3	22.861
	CNS0095595	Whole white alabastrum(diploid) 2	18.960
	CNS0095596	Whole white alabastrum(diploid) 3	18.694
	CNS0095597	Whole white alabastrum(diploid) 4	14.814
	CNS0095598	Silvery flower (diploied) 1	16.266
	CNS0095599	Silvery flower (diploied) 2	11.289
	CNS0095600	Silvery flower (diploied) 3	14.606
	CNS0095601	Golden flower (diploid) 1	14.310
	CNS0095602	Golden flower (diploid) 2	16.129
	CNS0095603	Golden flower (diploid) 3	14.370
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.268
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.969
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.993
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.745
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.659
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.617
	CNS0095610	Silvery flower (tetraploid) 1	13.771
	CNS0095611	Silvery flower (tetraploid) 2	14.946
	CNS0095612	Silvery flower (tetraploid) 3	9.380
	CNS0095613	Golden flower (tetraploid) 1	6.159
	CNS0095614	Golden flower (tetraploid) 2	12.265
	CNS0095615	Golden flower (tetraploid) 3	6.320
CRA001975	CRR073297	Stem 1	25.260
	CRR073298	Stem 2	24.369
	CRR073299	Stem 3	18.826
	CRR073300	Leaf 1	22.283
	CRR073301	Leaf 2	21.069
	CRR073302	Leaf 3	19.534
	CRR073303	Juvenile bud 1	18.218
	CRR073304	Juvenile bud 2	11.735
	CRR073305	Juvenile bud 3	20.104
	CRR073306	Third green 1	3.583
	CRR073307	Third green 2	4.472
	CRR073308	Third green 3	5.017
	CRR073309	Second white 1	5.615
	CRR073310	Second white 2	5.487
	CRR073311	Second white 3	3.675
	CRR073312	Silver flowering 1	5.679
	CRR073313	Silver flowering 2	5.469
	CRR073314	Silver flowering 3	5.221
	CRR073315	Gold flowering 1	6.653
	CRR073316	Gold flowering 2	16.376
	CRR073317	Gold flowering 3	11.076
	CRR073318	Tawny withering 1	17.626
	CRR073319	Tawny withering 2	17.575
	CRR073320	Tawny withering 3	18.511