Gene detail

Detail information of GWHGAAZE013966

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002300756.1	0	cytochrome P450 family protein [Populus trichocarpa]
Swissprot	tr\|Q9LJK2\|ABAH4_ARATH	8E-74	Abscisic acid 8'-hydroxylase 4
trEMBL	tr\|B9GRL1\|B9GRL1_POPTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:EEE80029.1}
TAIR10	AT1G19630.1	2E-154	cytochrome P450, family 722, subfamily A, polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3637102	3642102	+
GWHAAZE00000004	mRNA	3637102	3642102	+
GWHAAZE00000004	exon	3637102	3637332	+
GWHAAZE00000004	exon	3638591	3638912	+
GWHAAZE00000004	exon	3640445	3640594	+
GWHAAZE00000004	exon	3640668	3640839	+
GWHAAZE00000004	exon	3640924	3641003	+
GWHAAZE00000004	exon	3641091	3641177	+
GWHAAZE00000004	exon	3641274	3641352	+
GWHAAZE00000004	exon	3641443	3641549	+
GWHAAZE00000004	exon	3641635	3641753	+
GWHAAZE00000004	exon	3641949	3642102	+
GWHAAZE00000004	five_prime_UTR	3637102	3637249	+
GWHAAZE00000004	CDS	3637250	3637332	+
GWHAAZE00000004	CDS	3638591	3638912	+
GWHAAZE00000004	CDS	3640445	3640594	+
GWHAAZE00000004	CDS	3640668	3640839	+
GWHAAZE00000004	CDS	3640924	3641003	+
GWHAAZE00000004	CDS	3641091	3641177	+
GWHAAZE00000004	CDS	3641274	3641352	+
GWHAAZE00000004	CDS	3641443	3641549	+
GWHAAZE00000004	CDS	3641635	3641753	+
GWHAAZE00000004	CDS	3641949	3642102	+

Transcript Sequence
>GWHTAAZE013980 TTTGCCTCCAATTTCATACAATTACTGTTACTTTTACGCAATAATATTATACATAGTTTTGACATGGGTTATTAGTCGACTTCTAAAGGCTTTATGGAACGGTTTTGGATTAACCGCAGAGATTCCTCCGGGTAATCGAGGTTTACCCATGATTGGCGAAACTCTGCAATTCATGTCTGCGATTAATAGCAACGAGGGCTTTTATGATTTTGTACGAATTCGGCGACTCCGGTATGGAAATTGCTTTAAAACGAAATTGTTTGGGGAGGATCACGTATTTGTATCAAGCACGGAATGGGCGAAGAGAATATTGAATAATGATTTGGGGAAATTCGGGAAGAAATACATAAGGTCCATTGGGGAGCTAGTGGGGGATCAAAGCGTTCTTTGTGCTCACCAACAAAACCACAAATTCATAAGAAGCAGGCTCACCCATTTGCAATCCCTTCATTCAATCTCCTCATTCGTCATTCAATTCGACCAATTGATTCTCAAAACTCTTGCCACCTGGACCCAAAAACCCACCATCCTCGTCCTCCGAGAAGCACTTAAGATAACCTCCAAGGCAATGTGCAAGATTCTGATGAGTTTGGAGGATGAAGATGAATTGGAGATGCTGCAAAAAGATGTTGATAATGTTTGTGAGGCAATGCTAGCATTCCCATTGAGGTTGCCCTATACTAGATTTCACCAAGGCCTAAAGGCAAGAAAAAGAATAATGAGCAGACTGGATAGGATTATCAACGAAAGAAGACACTTACAAGAAACTCGTTATGAAGATCTTTTACAGCACCTTCTGACCAAAGAGAATGACGAAGCACTGTCACTAACAGATGAACAGATCAAAGATAATATCTTAACCATCATTATTGCAGGTCAAGATACAACAGCAAGTGCAATTACATGGATGATCAAGTATTTGGATGAAAACCAAGGGGTCCTTAATACGCTTCGGGCAGAGCAACTTGCCGTTGCAGAGAGGATTTCGCCCAATTCATTTATTACACTCGAGGTTCTTAATGACATGCCATATGCTTCTAAGGTTGTTAAGGAATCACTAAGAATGGCATCTGTGGTACCATGGTTCCCCAGGCTGGCACTCCACGACTGTGAAATTGAAGGATACAAGATCATGAAAGGGTGGAACATTAATGTTGATGCTAGATCAGTACACCTTGATCCAAATGTTTATGATGACCCTGATAAGTTTATTCCCTCTAGATTCGATGATGAATCAAAACCATACAGCTTCTTGGCTTTCGGAATAGGTGGAAGGACATGCCTGGGAATGAATTTAGCTAGATCTATGATGCTAATATTCGTCCATCGTTTGGTTATCACATACAGGTGGAGGGTGATGAACTCTGATTCAAGCATTGAGAAGTGGGCTATTTTTTCGAGATTAAAAAGTGGATGCCCTATACAGATTGTCCCTTTGGAGAAACGAGATACAGATTCTACATATAAACAACGTACAGAAAAGTGGAAGCAACAAATCTAG

Network for GWHGAAZE013966

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	14	407	1.30E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.969
	SRR3591706	second leaf	0.141
	SRR3591707	mature leaf	0.759
	SRR3591708	Shoot apex	1.358
	SRR3591709	Stem	58.506
	SRR3591710	White floral bud	39.804
	SRR3591711	White flower	10.559
	SRR3591712	Green floral bud	17.345
	SRR3591713	Yellow flower	1.889
SRP173429	SRR8316895	Juvenile bud stage	3.152
	SRR8316896	Juvenile bud stage	5.943
	SRR8316897	Juvenile bud stage	3.000
	SRR8316894	Third green stage	5.509
	SRR8316900	Third green stage	24.384
	SRR8316901	Third green stage	23.973
	SRR8316898	Complete white stage	21.871
	SRR8316899	Complete white stage	24.599
	SRR8316903	Complete white stage	31.275
	SRR8316902	Silver flowering stage	38.839
	SRR8316904	Silver flowering stage	44.252
	SRR8316905	Silver flowering stage	17.523
	SRR8316906	Gold flowering stage	44.471
	SRR8316907	Gold flowering stage	60.125
	SRR8316908	Gold flowering stage	71.435
SRP132670	SRR6706286	Control	7.541
	SRR6706287	Light intensity 50%	7.628
	SRR6706288	Light intensity 20%	6.767
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.886
	CNS0095593	Slightly white alabastrum(diploid) 2	6.664
	CNS0095594	Slightly white alabastrum(diploid) 3	5.246
	CNS0095595	Whole white alabastrum(diploid) 2	10.895
	CNS0095596	Whole white alabastrum(diploid) 3	10.456
	CNS0095597	Whole white alabastrum(diploid) 4	8.175
	CNS0095598	Silvery flower (diploied) 1	5.031
	CNS0095599	Silvery flower (diploied) 2	7.033
	CNS0095600	Silvery flower (diploied) 3	13.458
	CNS0095601	Golden flower (diploid) 1	1.086
	CNS0095602	Golden flower (diploid) 2	4.214
	CNS0095603	Golden flower (diploid) 3	2.294
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.484
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.421
	CNS0095610	Silvery flower (tetraploid) 1	4.375
	CNS0095611	Silvery flower (tetraploid) 2	4.675
	CNS0095612	Silvery flower (tetraploid) 3	5.010
	CNS0095613	Golden flower (tetraploid) 1	1.516
	CNS0095614	Golden flower (tetraploid) 2	1.087
	CNS0095615	Golden flower (tetraploid) 3	1.202
CRA001975	CRR073297	Stem 1	1.548
	CRR073298	Stem 2	2.742
	CRR073299	Stem 3	1.350
	CRR073300	Leaf 1	8.040
	CRR073301	Leaf 2	8.236
	CRR073302	Leaf 3	7.660
	CRR073303	Juvenile bud 1	7.130
	CRR073304	Juvenile bud 2	6.284
	CRR073305	Juvenile bud 3	8.317
	CRR073306	Third green 1	7.466
	CRR073307	Third green 2	11.646
	CRR073308	Third green 3	8.878
	CRR073309	Second white 1	7.711
	CRR073310	Second white 2	5.477
	CRR073311	Second white 3	4.297
	CRR073312	Silver flowering 1	1.710
	CRR073313	Silver flowering 2	2.224
	CRR073314	Silver flowering 3	1.974
	CRR073315	Gold flowering 1	0.219
	CRR073316	Gold flowering 2	0.140
	CRR073317	Gold flowering 3	0.110
	CRR073318	Tawny withering 1	13.260
	CRR073319	Tawny withering 2	24.828
	CRR073320	Tawny withering 3	20.919