Gene detail

Detail information of GWHGAAZE013957

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002281075.2	PREDICTED: mitogen-activated protein kinase homolog NTF3 [Vitis vinifera]
Swissprot	tr\|Q40517\|NTF3_TOBAC	Mitogen-activated protein kinase homolog NTF3
trEMBL	tr\|A5BF64\|A5BF64_VITVI	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}
TAIR10	AT1G59580.2	mitogen-activated protein kinase homolog 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3467973	3470720	-
GWHAAZE00000004	mRNA	3467973	3470720	-
GWHAAZE00000004	exon	3467973	3468653	-
GWHAAZE00000004	exon	3469992	3470419	-
GWHAAZE00000004	exon	3470675	3470720	-
GWHAAZE00000004	CDS	3470675	3470720	-
GWHAAZE00000004	CDS	3469992	3470419	-
GWHAAZE00000004	CDS	3467973	3468653	-

Transcript Sequence
>GWHTAAZE013971 ATGAATGAAGAGATGATTGGCAAAGTGATGGGGGACCTAGTCTCTGGTAGAATGGCAACTCCAGTTGAGCCTCCTAATGGGATTAGAACCCCGGGGAAGCATTACTATTCCATGTGGCAAACCTTGTTTGAAATCGACACCAAGTATGTTCCAGTCAAGCCTATTGGTCGAGGGGCATACGGTATTGTTTGCTCATCTGTTAATAGGGAAACCAATGAGAAAGTCGCAATTAAGAAGATACATAATGCCTTTGAGAACCGGATTGACGCACTGAGGACTTTGCGAGAAATAAAGCTTCTCCGCCATCTGAGACATGAAAATGTGATTGCTTTGAAAGATGTGATGATGCCTAACCATAGGAGAAGTTTCAAGGATGTCTATTTGGTTTATGAACTTATGGATACAGATTTGCATCAGATTGTTAAGTCCTCTCAAGCACTTACTAATGACCATTGTCAATATTTCCTCTTCCAGTTACTCCGAGGTCTAAGGTATCTTCACTCAGCAAACATTCTTCATCGCGACTTGAAGCCTGGGAACCTACTTATCAATGCAAACTGCGACCTCAAAATATGTGATTTTGGTCTTGCACGAACCAGCAGTGGCAAAGCATTCATGACTGAGTATGTCGTTACTCGTTGGTACCGGGCCCCAGAGCTCCTCCTCTGCTGTGACAACTACGGGACCTCGATTGATGTGTGGTCGGTCGGTTGCATCTTTGCTGAGCTTCTTGGCCGTAAGCCCATATTCCCCGGTACAGAGTGTCTCAACCAACTCAAACTGATAATCAACATCCTTGGCAGCCAGAGAGAAGCTGATATTGAATTCATCGATAACCCAAAGGCGAGAAAGTTCATAAAATCACTTCCGTATTCCCCAGGTACATCTTTTTCCCGTCTTTATTCCCATGCACATCCGTTGGCAATTGATCTGCTACAGAAGATGCTTGTCTTCGATCCTTCTAAGAGGATTAGTGTTACTGAAGCACTCCAACACCCTTACATGTCTCCCCTGTATGATCCGAGCTGTGACCCACCGGCCCAGGTCCCGCTTGATCTCGACATAGATGAGGATTTAGGAGAAGAGATGATAAGAGAGATGATGTGGAAAGAAATGCTTCATTACCATCCCGAAATTGCTACTGTCAATGCAGAG

Network for GWHGAAZE013957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	50	335	5.20E-72

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
K20535	MPK1_2	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004707	molecular_function	MAP kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.905
	SRR3591706	second leaf	25.607
	SRR3591707	mature leaf	24.019
	SRR3591708	Shoot apex	33.606
	SRR3591709	Stem	59.757
	SRR3591710	White floral bud	67.062
	SRR3591711	White flower	48.809
	SRR3591712	Green floral bud	63.733
	SRR3591713	Yellow flower	43.018
SRP173429	SRR8316895	Juvenile bud stage	24.731
	SRR8316896	Juvenile bud stage	37.742
	SRR8316897	Juvenile bud stage	21.380
	SRR8316894	Third green stage	19.015
	SRR8316900	Third green stage	70.459
	SRR8316901	Third green stage	68.068
	SRR8316898	Complete white stage	44.401
	SRR8316899	Complete white stage	108.660
	SRR8316903	Complete white stage	65.264
	SRR8316902	Silver flowering stage	10.360
	SRR8316904	Silver flowering stage	17.122
	SRR8316905	Silver flowering stage	6.213
	SRR8316906	Gold flowering stage	24.250
	SRR8316907	Gold flowering stage	25.769
	SRR8316908	Gold flowering stage	36.059
SRP132670	SRR6706286	Control	59.762
	SRR6706287	Light intensity 50%	64.463
	SRR6706288	Light intensity 20%	62.797
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.608
	CNS0095593	Slightly white alabastrum(diploid) 2	33.731
	CNS0095594	Slightly white alabastrum(diploid) 3	19.867
	CNS0095595	Whole white alabastrum(diploid) 2	32.992
	CNS0095596	Whole white alabastrum(diploid) 3	33.921
	CNS0095597	Whole white alabastrum(diploid) 4	27.978
	CNS0095598	Silvery flower (diploied) 1	32.119
	CNS0095599	Silvery flower (diploied) 2	31.102
	CNS0095600	Silvery flower (diploied) 3	57.959
	CNS0095601	Golden flower (diploid) 1	30.181
	CNS0095602	Golden flower (diploid) 2	49.527
	CNS0095603	Golden flower (diploid) 3	43.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.146
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.975
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.916
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.646
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.389
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.314
	CNS0095610	Silvery flower (tetraploid) 1	62.026
	CNS0095611	Silvery flower (tetraploid) 2	89.682
	CNS0095612	Silvery flower (tetraploid) 3	60.112
	CNS0095613	Golden flower (tetraploid) 1	27.877
	CNS0095614	Golden flower (tetraploid) 2	51.814
	CNS0095615	Golden flower (tetraploid) 3	22.206
CRA001975	CRR073297	Stem 1	53.708
	CRR073298	Stem 2	53.753
	CRR073299	Stem 3	54.602
	CRR073300	Leaf 1	80.083
	CRR073301	Leaf 2	68.336
	CRR073302	Leaf 3	63.254
	CRR073303	Juvenile bud 1	104.298
	CRR073304	Juvenile bud 2	148.595
	CRR073305	Juvenile bud 3	120.080
	CRR073306	Third green 1	10.905
	CRR073307	Third green 2	9.853
	CRR073308	Third green 3	14.183
	CRR073309	Second white 1	16.529
	CRR073310	Second white 2	11.855
	CRR073311	Second white 3	5.378
	CRR073312	Silver flowering 1	4.015
	CRR073313	Silver flowering 2	8.043
	CRR073314	Silver flowering 3	4.070
	CRR073315	Gold flowering 1	24.801
	CRR073316	Gold flowering 2	32.706
	CRR073317	Gold flowering 3	26.693
	CRR073318	Tawny withering 1	41.229
	CRR073319	Tawny withering 2	33.570
	CRR073320	Tawny withering 3	36.385