Gene detail

Detail information of GWHGAAZE013949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010672737.1	1.4377E-141	PREDICTED: BEL1-like homeodomain protein 3 isoform X1 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9FWS9\|BLH3_ARATH	1E-111	BEL1-like homeodomain protein 3
trEMBL	tr\|B9H0U8\|B9H0U8_POPTR	5E-139	Uncharacterized protein {ECO:0000313\|EMBL:EEE86634.2}
TAIR10	AT1G75410.2	2E-95	BEL1-like homeodomain 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3370476	3372585	+
GWHAAZE00000004	mRNA	3370476	3372585	+
GWHAAZE00000004	exon	3370476	3371309	+
GWHAAZE00000004	exon	3371436	3371806	+
GWHAAZE00000004	exon	3371891	3371951	+
GWHAAZE00000004	exon	3372081	3372177	+
GWHAAZE00000004	exon	3372260	3372585	+
GWHAAZE00000004	CDS	3370476	3371309	+
GWHAAZE00000004	CDS	3371436	3371806	+
GWHAAZE00000004	CDS	3371891	3371951	+
GWHAAZE00000004	CDS	3372081	3372177	+
GWHAAZE00000004	CDS	3372260	3372585	+

Transcript Sequence
>GWHTAAZE013963 ATGGCTACTTATTACCCTAGTTCAAGCAATCAAAGTGACGTCTTGCCAACTCCATATTTATCGACCCAAAAACCTGATCCTTCTTATCCTGATAATATGATGTACCTGAACCAAGATTCTTTGTCTCATTATTACAGCGTTGAGATCCCATCTGCTGATGGAAACAGAGGTGAAATGGTGTTCATTCCACCAACTGGTGAACCTATTAGTACACAACAAGTTGATCACCAGCTAAATATGACAACGGGTCTTCAAGTTGATGACCCTGTTATTAGGGAGACTCAAATGCTTTCGAGGCCAGCAGACCACATTTTAGACGGTGAACAGAATTTCCAGTATCAAGAATTATCTCTAAGCCTCGGCATGCAGATACCTTCTCCGTTTGGCATGCCTTCATTTCAGTACCATTATACAAATTCATGGAATTCCCATGTTCCTGAACCAGGGGAGTGTGGCTCTCAAAGTAACGAGCTAAGAAACGATGAAAGCCCGTCTTTCAAGTTAACTAATGACACTCACAATACATTCAAAGTTGGGGCAACGAACACTCAGTGCTCAATAAGCCCAAAAAGAATGCACTCTGTTCCCCAACTGTATGAACCGTTGTCAGGACTTGGATGCACAATTTCTGACTCCAAATTTCTCAAGGCCACACAGCAATTGCTTGATGAATTAGTTAATGTTCACGAAGCTTTAAAGCAGCCAAAGTTGGACGAACATCAAAATTTCCATGCATTTGATCCAGATAGCTCGAAAGAGGCTGGTGAACTTTCACCCGATGAACGAAAGAATTTGCACAGCAAGATGACAAAACTATCGTCCATGTTGGATGAGGTGGATAGAAGATACAACCAATATAACAATCAGATGCAACTTGTAGAAGCATCATTTGAAATGGTTGCTGGGTGTGGTGCTGCTAAATCATACACAAGACTTGCCCTGCATACAATTTCTCGCCATTTTCGCTGCTTGCGTGATGCAATTTGTAGGCAAATTCAAGTGACCTCTCGAAGTTTAGGGGAGAAGGATGATTCCCTAGGTACTCGAGTATTACCTCGTCTCCGTTATGTCGACAAGAAGATCAGGCAACAAAGGACCCTCCACCAGCTCGGTGTGGTGCAACATTCTTGGAGGCCACAAAGAGGGTTGCCTGAAAACTCCGTTTCAATACTTCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCTTACCCAAAAGATTCAGAAAAAATCATGCTAGCGAGGCAGACAGGCCTCACCAGAAGCCAGGTTGCAAATTGGTTTATAAATGCACGGGTGCGTCTTTGGAAACCTATGGTTGAAGATATGTACAAAGAAGAGTTTGGCGCCGAGTCTGAAGCAGAATGGCCCAATGCTGATGATCAGAAAGTTTGTGCAGAGGACATTATTACACCCAACCAGAGTGGTGCTGAGAGTCTTAAGGCTGCTGATATGGCATATAATATCTCCACATTGGGTAATTTTACGGTTAAAAATAAAGTATCACTGGCATTGGGATTGCAGCAAAGCGAGAAGGGTCCCTTACATGTGCCTGGTGGGACAGAAATAAAAGGTGATGATGAAGAGGAAACTTCTTCTGTGGGCGCTGATCACGTGGACCGTCACCACGTCCACATGGCAAACCAGTACAGGTTCTGCAACCCCCATCTGTTACCTGATTTTGTGGCATGA

Network for GWHGAAZE013949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.12	POX	209	328	1.00E-41
PF05920.12	Homeobox_KN	394	433	1.10E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.010
	SRR3591706	second leaf	0.805
	SRR3591707	mature leaf	0.149
	SRR3591708	Shoot apex	1.723
	SRR3591709	Stem	23.843
	SRR3591710	White floral bud	1.797
	SRR3591711	White flower	8.598
	SRR3591712	Green floral bud	1.335
	SRR3591713	Yellow flower	11.990
SRP173429	SRR8316895	Juvenile bud stage	3.955
	SRR8316896	Juvenile bud stage	6.606
	SRR8316897	Juvenile bud stage	2.782
	SRR8316894	Third green stage	1.761
	SRR8316900	Third green stage	2.577
	SRR8316901	Third green stage	3.506
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	1.696
	SRR8316903	Complete white stage	0.729
	SRR8316902	Silver flowering stage	0.406
	SRR8316904	Silver flowering stage	1.048
	SRR8316905	Silver flowering stage	0.105
	SRR8316906	Gold flowering stage	2.105
	SRR8316907	Gold flowering stage	1.970
	SRR8316908	Gold flowering stage	2.641
SRP132670	SRR6706286	Control	1.482
	SRR6706287	Light intensity 50%	1.870
	SRR6706288	Light intensity 20%	1.279
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.134
	CNS0095593	Slightly white alabastrum(diploid) 2	3.609
	CNS0095594	Slightly white alabastrum(diploid) 3	6.071
	CNS0095595	Whole white alabastrum(diploid) 2	3.248
	CNS0095596	Whole white alabastrum(diploid) 3	2.703
	CNS0095597	Whole white alabastrum(diploid) 4	2.487
	CNS0095598	Silvery flower (diploied) 1	4.556
	CNS0095599	Silvery flower (diploied) 2	4.256
	CNS0095600	Silvery flower (diploied) 3	2.444
	CNS0095601	Golden flower (diploid) 1	4.949
	CNS0095602	Golden flower (diploid) 2	3.288
	CNS0095603	Golden flower (diploid) 3	3.658
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.274
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.731
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.319
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.896
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.709
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.973
	CNS0095610	Silvery flower (tetraploid) 1	6.665
	CNS0095611	Silvery flower (tetraploid) 2	3.882
	CNS0095612	Silvery flower (tetraploid) 3	4.136
	CNS0095613	Golden flower (tetraploid) 1	5.329
	CNS0095614	Golden flower (tetraploid) 2	9.031
	CNS0095615	Golden flower (tetraploid) 3	4.962
CRA001975	CRR073297	Stem 1	6.480
	CRR073298	Stem 2	5.478
	CRR073299	Stem 3	2.006
	CRR073300	Leaf 1	3.572
	CRR073301	Leaf 2	3.330
	CRR073302	Leaf 3	0.480
	CRR073303	Juvenile bud 1	1.117
	CRR073304	Juvenile bud 2	0.594
	CRR073305	Juvenile bud 3	1.093
	CRR073306	Third green 1	0.732
	CRR073307	Third green 2	0.292
	CRR073308	Third green 3	0.628
	CRR073309	Second white 1	1.965
	CRR073310	Second white 2	2.775
	CRR073311	Second white 3	1.559
	CRR073312	Silver flowering 1	5.912
	CRR073313	Silver flowering 2	3.803
	CRR073314	Silver flowering 3	3.098
	CRR073315	Gold flowering 1	0.107
	CRR073316	Gold flowering 2	2.295
	CRR073317	Gold flowering 3	0.172
	CRR073318	Tawny withering 1	10.763
	CRR073319	Tawny withering 2	11.078
	CRR073320	Tawny withering 3	11.256