Gene detail

Detail information of GWHGAAZE013928

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280716.1	6.49481E-93	PREDICTED: B-box zinc finger protein 21 [Vitis vinifera]
Swissprot	tr\|Q9LQZ7\|BBX21_ARATH	2E-70	B-box zinc finger protein 21 {ECO:0000303\|PubMed:19920209}
trEMBL	tr\|E0CPH8\|E0CPH8_VITVI	2E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19794.3}
TAIR10	AT1G75540.1	5E-55	salt tolerance homolog2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2997733	2998836	-
GWHAAZE00000004	mRNA	2997733	2998836	-
GWHAAZE00000004	exon	2997733	2997869	-
GWHAAZE00000004	exon	2997981	2998026	-
GWHAAZE00000004	exon	2998111	2998569	-
GWHAAZE00000004	exon	2998654	2998836	-
GWHAAZE00000004	CDS	2998654	2998836	-
GWHAAZE00000004	CDS	2998111	2998569	-
GWHAAZE00000004	CDS	2997981	2998026	-
GWHAAZE00000004	CDS	2997733	2997869	-

Transcript Sequence
>GWHTAAZE013942 ATGAAGATCCAATGTGAATTCTGTTACAAAGCTGAAGCGTCGGTGTTTTGTTCAGCGGATGAGGCTGCCCTCTGCCATGGCTGTGATCACCGGGTCCACCATGCCAACAAACTAGCGGGGAAACACCACCGCTTCTCTCTCCTCCCCTTCCCCAAACACTTCCCCCTATGTGACATCTGCCAGGAGAAGAGGGCTTTCTTGTTCTGTCAAGAAGACAGAGCGGTGCTATGCAAAGACTGTGATATTCCAATTCACAAGGCGAACGAGCATACTCAGAAGCATAACAGATTCCTTTTAACGGGGGTTAAGCTCTCTCCAACGTCGTCTCTTTATTCATCATCATCATCATCATCATCATCAGTCATGGACGGCTGTGATGTTGTTCCTCACCTTCCCACTCAAAAATCATCCAACAAGCTGACTTCTCTGCCTCCTCCGGTCATTCCAAATAATTCACCTTCCCTTCCAAAATTACCAACAACTGCAACAATTGTTGACAAATTTGGTAAAAATAACCAAGTGATGAATGGAGTTGGTAATGGTTCCACGAGTAGCATTTCGGAGTATTTGATAGATATGTTACCAGGATGGCATGTTGAAGACTTTCTTGATTCCTCTTCCACCCCTTCTACTTTCCTTAAGACTGGTGACAGTGATTTGATGCCGTTTTGGGATGCTGAGCTAGAGGTTGACTTCAAGGACACCGTGGAAGCTCAAGCTGCAAATAAGATCAAAACTAGCAGAAAGTGGAGAGATAATTGTTGCTTTAATGTTCCACAGATCAGCCCTCCTTCCACTACTTCCAAGAGATCAAGAACTTCGTAG

Network for GWHGAAZE013928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	55	91	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.112
	SRR3591711	White flower	0.091
	SRR3591712	Green floral bud	0.491
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.422
	SRR8316896	Juvenile bud stage	0.480
	SRR8316897	Juvenile bud stage	0.332
	SRR8316894	Third green stage	0.337
	SRR8316900	Third green stage	1.036
	SRR8316901	Third green stage	1.176
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.375
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.120
SRP132670	SRR6706286	Control	2.210
	SRR6706287	Light intensity 50%	2.061
	SRR6706288	Light intensity 20%	1.709
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.406
	CNS0095593	Slightly white alabastrum(diploid) 2	0.400
	CNS0095594	Slightly white alabastrum(diploid) 3	0.089
	CNS0095595	Whole white alabastrum(diploid) 2	0.495
	CNS0095596	Whole white alabastrum(diploid) 3	0.463
	CNS0095597	Whole white alabastrum(diploid) 4	0.455
	CNS0095598	Silvery flower (diploied) 1	0.002
	CNS0095599	Silvery flower (diploied) 2	0.254
	CNS0095600	Silvery flower (diploied) 3	0.105
	CNS0095601	Golden flower (diploid) 1	0.228
	CNS0095602	Golden flower (diploid) 2	0.039
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.391
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.576
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.448
	CNS0095610	Silvery flower (tetraploid) 1	0.345
	CNS0095611	Silvery flower (tetraploid) 2	0.118
	CNS0095612	Silvery flower (tetraploid) 3	0.062
	CNS0095613	Golden flower (tetraploid) 1	0.081
	CNS0095614	Golden flower (tetraploid) 2	0.168
	CNS0095615	Golden flower (tetraploid) 3	0.076
CRA001975	CRR073297	Stem 1	0.687
	CRR073298	Stem 2	1.002
	CRR073299	Stem 3	1.266
	CRR073300	Leaf 1	2.592
	CRR073301	Leaf 2	1.832
	CRR073302	Leaf 3	1.877
	CRR073303	Juvenile bud 1	2.482
	CRR073304	Juvenile bud 2	1.589
	CRR073305	Juvenile bud 3	7.064
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.039
	CRR073320	Tawny withering 3	0.000