Gene detail

Detail information of GWHGAAZE013896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009757577.1	0	PREDICTED: BRCA1-A complex subunit BRE [Nicotiana sylvestris]
trEMBL	tr\|M1ALZ5\|M1ALZ5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025741}
TAIR10	AT5G42470.1	1E-129	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2366321	2372621	+
GWHAAZE00000004	mRNA	2366321	2372621	+
GWHAAZE00000004	exon	2366321	2366492	+
GWHAAZE00000004	exon	2366635	2366722	+
GWHAAZE00000004	exon	2366855	2367041	+
GWHAAZE00000004	exon	2367168	2367258	+
GWHAAZE00000004	exon	2369329	2369421	+
GWHAAZE00000004	exon	2369533	2369631	+
GWHAAZE00000004	exon	2371268	2371398	+
GWHAAZE00000004	exon	2371557	2371605	+
GWHAAZE00000004	exon	2371693	2371782	+
GWHAAZE00000004	exon	2371872	2371925	+
GWHAAZE00000004	exon	2372166	2372231	+
GWHAAZE00000004	exon	2372354	2372451	+
GWHAAZE00000004	exon	2372552	2372621	+
GWHAAZE00000004	five_prime_UTR	2366321	2366414	+
GWHAAZE00000004	CDS	2366415	2366492	+
GWHAAZE00000004	CDS	2366635	2366722	+
GWHAAZE00000004	CDS	2366855	2367041	+
GWHAAZE00000004	CDS	2367168	2367258	+
GWHAAZE00000004	CDS	2369329	2369421	+
GWHAAZE00000004	CDS	2369533	2369631	+
GWHAAZE00000004	CDS	2371268	2371398	+
GWHAAZE00000004	CDS	2371557	2371605	+
GWHAAZE00000004	CDS	2371693	2371782	+
GWHAAZE00000004	CDS	2371872	2371925	+
GWHAAZE00000004	CDS	2372166	2372231	+
GWHAAZE00000004	CDS	2372354	2372451	+
GWHAAZE00000004	CDS	2372552	2372621	+

Transcript Sequence
>GWHTAAZE013910 TTCAGTGAGTCTCTCGAATCTTTAAATTAAAACACTCGACTAGATCGCCGGACATCACCGTCGCCGAACCGACGGCGAACGAACCCTAAATACCATGGCCGTGGATAGTGTACCCCCTCTCATCAACGCACAGCTCAATTACCTCCTCACACATTCACCTCTCTCAATCAAGGTTGAGCAGATGTGGTCGGGTTCCAGGGATCCTGGTTTGTTAGATCGCTTCACCTTAGTCATTCCTTTTTGCCTCGATTTTATCAAATGGGATGTTATATACAACGCACAGTATCCATTGGTGCCACCAGACGTAATCTTTGGACCCGATGATGAAAATTTTCGTCCTTTTCATGGGGTGGGAGAACAAGGGGACCCAAAGTCTATGAAGAACAGCTTGTCGGATTGGAACAGCAAAGACCCTACTAGACTTCTATCTCTCATTCTTGAACTTAGGAATTTGTATATGGCTTACCACAGAAAGCGTGTTGGAGAAGTTGATGATGATAGACTGAAGTTTGAAATTAGCACTGTTATTTCTAAGGAGGGAATTGAAATGCTTGTGAGCACAGCTGTTGACAAGGTATTTCTTATAAAAGGATGTGTTGGCACTTATCATCCCTGCTCTGGGAATGGGAAATCGGAAGAGGTAAAATTTGCAGTGCCTTTACTGGAGATGGATATCAATAAGATGGTCTTTGGATCCACTTGGCGACATCAACAGAAGATATACTTACAGGTTATATTTCCTGTGGGTAGAAGATACTTAACAACCCCTTCACCCCCACGTTTAAAATTGGTTTGTTCTCCGGAGTTGAAAGCTCTGTTTTCCATTGAAGATTTCAGGCTTCCTGCATGGTTGGACGGAATGTGCTTGGCTGAATATCTTCCCACTTTAGAAGAAATGCTTGAGTCACAGATTAGAGATGCAGTGTCGGCAATTGAAGTTAGAAGGAAGTTTATTGTGGTGTTGACTCCTCTTTTTGGAAGGCCGGTAGAAGCTGATCCAGTTTTCTGCCGGAAGGCAACATTTCTAGCTGCCTCTGGGGTCTTTACATTTCTGGTCCATATCTCCCTTCCCATTCAGTTTCCAAAGCATCAACCAGCTCTTATGCTTCAAAGTTCACAGCATTTCAATTCTCTAGGTGCACCAATCAAGTCAGCCCTTTTGACAGATTATCCGTGGAGTCCCAGATGGGAACCATCAGAAATGGCCGAGAGGCTCTTCGACTTTATGGCGGAAGAATGCTTAAGCTTCAAGAAGTACTGCAATGAGAGTATGCTTCAGCAACGCTAG

Network for GWHGAAZE013896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06113.13	BRE	24	344	2.50E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12173	BRE, BRCC45	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0070531	cellular_component	BRCA1-A complex
GO:0070552	cellular_component	BRISC complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.224
	SRR3591706	second leaf	14.090
	SRR3591707	mature leaf	9.901
	SRR3591708	Shoot apex	28.468
	SRR3591709	Stem	17.926
	SRR3591710	White floral bud	14.156
	SRR3591711	White flower	19.057
	SRR3591712	Green floral bud	18.565
	SRR3591713	Yellow flower	11.483
SRP173429	SRR8316895	Juvenile bud stage	15.162
	SRR8316896	Juvenile bud stage	19.543
	SRR8316897	Juvenile bud stage	10.577
	SRR8316894	Third green stage	8.285
	SRR8316900	Third green stage	22.219
	SRR8316901	Third green stage	21.828
	SRR8316898	Complete white stage	8.429
	SRR8316899	Complete white stage	28.791
	SRR8316903	Complete white stage	12.532
	SRR8316902	Silver flowering stage	5.128
	SRR8316904	Silver flowering stage	7.354
	SRR8316905	Silver flowering stage	3.803
	SRR8316906	Gold flowering stage	9.948
	SRR8316907	Gold flowering stage	10.478
	SRR8316908	Gold flowering stage	11.486
SRP132670	SRR6706286	Control	20.142
	SRR6706287	Light intensity 50%	20.005
	SRR6706288	Light intensity 20%	19.770
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.933
	CNS0095593	Slightly white alabastrum(diploid) 2	15.650
	CNS0095594	Slightly white alabastrum(diploid) 3	14.673
	CNS0095595	Whole white alabastrum(diploid) 2	13.900
	CNS0095596	Whole white alabastrum(diploid) 3	9.530
	CNS0095597	Whole white alabastrum(diploid) 4	10.635
	CNS0095598	Silvery flower (diploied) 1	13.519
	CNS0095599	Silvery flower (diploied) 2	13.366
	CNS0095600	Silvery flower (diploied) 3	16.778
	CNS0095601	Golden flower (diploid) 1	13.127
	CNS0095602	Golden flower (diploid) 2	16.443
	CNS0095603	Golden flower (diploid) 3	16.122
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.140
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.681
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.328
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.222
	CNS0095610	Silvery flower (tetraploid) 1	16.666
	CNS0095611	Silvery flower (tetraploid) 2	16.562
	CNS0095612	Silvery flower (tetraploid) 3	11.679
	CNS0095613	Golden flower (tetraploid) 1	8.258
	CNS0095614	Golden flower (tetraploid) 2	13.864
	CNS0095615	Golden flower (tetraploid) 3	8.396
CRA001975	CRR073297	Stem 1	13.543
	CRR073298	Stem 2	11.306
	CRR073299	Stem 3	15.718
	CRR073300	Leaf 1	13.097
	CRR073301	Leaf 2	12.260
	CRR073302	Leaf 3	12.266
	CRR073303	Juvenile bud 1	13.526
	CRR073304	Juvenile bud 2	10.366
	CRR073305	Juvenile bud 3	13.656
	CRR073306	Third green 1	1.689
	CRR073307	Third green 2	2.188
	CRR073308	Third green 3	3.215
	CRR073309	Second white 1	3.199
	CRR073310	Second white 2	1.859
	CRR073311	Second white 3	2.136
	CRR073312	Silver flowering 1	1.282
	CRR073313	Silver flowering 2	2.035
	CRR073314	Silver flowering 3	1.535
	CRR073315	Gold flowering 1	6.676
	CRR073316	Gold flowering 2	8.056
	CRR073317	Gold flowering 3	6.531
	CRR073318	Tawny withering 1	12.768
	CRR073319	Tawny withering 2	14.938
	CRR073320	Tawny withering 3	13.314