Detail information of GWHGAAZE013882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07373.10unnamed protein product [Coffea canephora]
Swissprottr|F4I0P8|VP35B_ARATH0Vacuolar protein sorting-associated protein 35B
trEMBLtr|A0A068UIB3|A0A068UIB3_COFCA0Vacuolar protein sorting-associated protein 35 {ECO:0000256|PIRNR:PIRNR009375}
TAIR10AT1G75850.10VPS35 homolog B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene21137892126585-
GWHAAZE00000004mRNA21137892126585-
GWHAAZE00000004exon21264362126585-
GWHAAZE00000004exon21262552126351-
GWHAAZE00000004exon21260432126166-
GWHAAZE00000004exon21256052125790-
GWHAAZE00000004exon21246672124754-
GWHAAZE00000004exon21244102124466-
GWHAAZE00000004exon21242202124309-
GWHAAZE00000004exon21240092124131-
GWHAAZE00000004exon21227932122867-
GWHAAZE00000004exon21226662122725-
GWHAAZE00000004exon21213202121436-
GWHAAZE00000004exon21207422120981-
GWHAAZE00000004exon21206042120669-
GWHAAZE00000004exon21203562120445-
GWHAAZE00000004exon21196702119759-
GWHAAZE00000004exon21186512118740-
GWHAAZE00000004exon21159622116030-
GWHAAZE00000004exon21148192114899-
GWHAAZE00000004exon21146042114711-
GWHAAZE00000004exon21144162114531-
GWHAAZE00000004exon21141132114196-
GWHAAZE00000004exon21137892113999-
GWHAAZE00000004CDS21264362126585-
GWHAAZE00000004CDS21262552126351-
GWHAAZE00000004CDS21260432126166-
GWHAAZE00000004CDS21256052125790-
GWHAAZE00000004CDS21246672124754-
GWHAAZE00000004CDS21244102124466-
GWHAAZE00000004CDS21242202124309-
GWHAAZE00000004CDS21240092124131-
GWHAAZE00000004CDS21227932122867-
GWHAAZE00000004CDS21226662122725-
GWHAAZE00000004CDS21213202121436-
GWHAAZE00000004CDS21207422120981-
GWHAAZE00000004CDS21206042120669-
GWHAAZE00000004CDS21203562120445-
GWHAAZE00000004CDS21196702119759-
GWHAAZE00000004CDS21186512118740-
GWHAAZE00000004CDS21159622116030-
GWHAAZE00000004CDS21148192114899-
GWHAAZE00000004CDS21146042114711-
GWHAAZE00000004CDS21144162114531-
GWHAAZE00000004CDS21141132114196-
GWHAAZE00000004CDS21137892113999-
Transcript Sequence

Network for GWHGAAZE013882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03635.18Vps35317604.40E-269
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18468VPS35 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport
GO:0042147biological_processretrograde transport, endosome to Golgi
GO:0030906cellular_componentretromer, cargo-selective complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.442
SRR3591706second leaf16.693
SRR3591707mature leaf18.611
SRR3591708Shoot apex21.886
SRR3591709Stem23.102
SRR3591710White floral bud18.095
SRR3591711White flower20.118
SRR3591712Green floral bud18.551
SRR3591713Yellow flower22.562
SRP173429 SRR8316895Juvenile bud stage 15.483
SRR8316896Juvenile bud stage 23.517
SRR8316897Juvenile bud stage 10.730
SRR8316894Third green stage 8.251
SRR8316900Third green stage 21.457
SRR8316901Third green stage 20.685
SRR8316898Complete white stage 7.859
SRR8316899Complete white stage 29.692
SRR8316903Complete white stage 15.129
SRR8316902Silver flowering stage7.518
SRR8316904Silver flowering stage14.262
SRR8316905Silver flowering stage5.794
SRR8316906Gold flowering stage 25.332
SRR8316907Gold flowering stage 20.438
SRR8316908Gold flowering stage 24.857
SRP132670SRR6706286Control12.110
SRR6706287Light intensity 50%14.260
SRR6706288Light intensity 20%15.952
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.035
CNS0095593Slightly white alabastrum(diploid) 212.606
CNS0095594Slightly white alabastrum(diploid) 314.150
CNS0095595Whole white alabastrum(diploid) 213.195
CNS0095596Whole white alabastrum(diploid) 39.670
CNS0095597Whole white alabastrum(diploid) 412.897
CNS0095598Silvery flower (diploied) 121.007
CNS0095599Silvery flower (diploied) 220.333
CNS0095600Silvery flower (diploied) 318.754
CNS0095601Golden flower (diploid) 119.485
CNS0095602Golden flower (diploid) 221.428
CNS0095603Golden flower (diploid) 319.364
CNS0095604Slightly white alabastrum(tetraploid) 115.042
CNS0095605Slightly white alabastrum(tetraploid) 212.481
CNS0095606Slightly white alabastrum(tetraploid) 323.737
CNS0095607Whole white alabastrum(tetraploid) 112.712
CNS0095608Whole white alabastrum(tetraploid) 211.476
CNS0095609Whole white alabastrum(tetraploid) 319.478
CNS0095610Silvery flower (tetraploid) 123.255
CNS0095611Silvery flower (tetraploid) 220.273
CNS0095612Silvery flower (tetraploid) 320.455
CNS0095613Golden flower (tetraploid) 113.898
CNS0095614Golden flower (tetraploid) 220.883
CNS0095615Golden flower (tetraploid) 322.251
CRA001975CRR073297Stem 116.951
CRR073298Stem 215.474
CRR073299Stem 312.066
CRR073300Leaf 118.242
CRR073301Leaf 214.102
CRR073302Leaf 311.342
CRR073303Juvenile bud 110.037
CRR073304Juvenile bud 27.122
CRR073305Juvenile bud 310.612
CRR073306Third green 13.762
CRR073307Third green 23.803
CRR073308Third green 34.313
CRR073309Second white 14.635
CRR073310Second white 25.677
CRR073311Second white 38.244
CRR073312Silver flowering 16.021
CRR073313Silver flowering 24.568
CRR073314Silver flowering 36.383
CRR073315Gold flowering 16.999
CRR073316Gold flowering 211.466
CRR073317Gold flowering 36.594
CRR073318Tawny withering 19.825
CRR073319Tawny withering 211.435
CRR073320Tawny withering 311.237