Gene detail

Detail information of GWHGAAZE013879

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP14668.1	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068V487\|A0A068V487_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313\|EMBL:CDP14668.1}
TAIR10	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	2097098	2100352	+
GWHAAZE00000004	mRNA	2097098	2100352	+
GWHAAZE00000004	exon	2097098	2100352	+
GWHAAZE00000004	CDS	2097098	2100352	+

Transcript Sequence
>GWHTAAZE013893 ATGGCATCAAACACCGAGTGTGGAAGGAGCTTTGCAAGGAGAGACTTGCTTTTGGAACATGAGTCTAAAGTTCAGAAATTGTGGGAAGAGAATAACGTTTTCAGGGCTGATGCCAAAGACGAACTTCCAAAACCGGGTGAAAAGTTCTTCGGCAACTTTCCGTTTCCTTATATGAACGGCTATCTTCACTTGGGTCACGCGTTCTCTCTTTCCAAGCTCGAGTTTGCTGCTGCTTATCACAGATTGAGGGGTGCTAATGTCCTGTTGCCTTTTGCTTTTCACTGTACTGGGATGCCAATCAAGGCATCGGCTGATAAACTTTCAAGGGAGATCCAGAAATTTGGTAACCCTCCTGTATTCCCAGATGTAACAGAGGATAAAGCTAGTGAACCCGAACCGAAACCTACTGAGGGGAACCAAGATATGCTAGATAAATTTAAGGGTAAGAAGTCTAAGGCAGTTTCCAAGGCTGGTGGAGATAAGTACCAGTGGGAGATAATGCGGAGTTATGGCCTTTCTGATGAAGAAATATCCAAGTTCCAGGATCCATATTATTGGTTGACCTACTTTCCCCCTCTAGCTGTAGAGGACCTGAAGGCTTTTGGATTGGGCTGTGACTGGAGGCGCACGTTTATCACAACTGATATGAACCCCTTTTTTGATTCATTCGTTAGGTGGCAGATGAGGAAATTGAAAGCAATGGGTAAAATTGTCAAAGACTTGAGGTACACTATATACTCCCCATTAGATGGACAGCCTTGTGCAGATCATGATCGAGCATCGGGTGAAGGTGTTATTCCGCAGGAGTACACACTAATAAAAATGGAGGTGGTCCCACCTTTTCCTCCGAAGTTGAGCACTCTTGAAGGCAAGAAAGTTTATCTTGCAGCTGCGACATTGAGGCCAGAGACCATGTATGGCCAAACCAACTCATGGGTATTGCCAGATGGAAAATACGGAGCATTTGAAGTGAACGAAACGGACGTTTTCATCTTAACAGAGAGGTCAGCTCTTAATCTAGCGTATCAGAGATTGTCTCGTGTCCCAGAGAAGCCAACTTGTTTGGCTGAGCTGACTGGTTATGATCTGATCGGTTTGCCTTTAAGATCTCCTCTTGCATTTAATGAGATTATATACGCCCTTCCTATGCTGTCAGTTCTCACAGACAAGGGTACCGGAATTGTTACTAGTGTTCCCAGTGATTCTCCTGATGATTTTATGGCACTACATGACTTGAAAGCAAAGCCGGCTTTTAGGGCCAAGTTTGGTGTAAAGGATGAGTGGGTCTTACCGTTTGAGGTCATCCCGATAATCAGCACCCCAGAATATGGAGACAAATCCGCAGAGAAAATTTGCACGGATATGAAAATCAAGAGCCAGAATGAGAGAGAGAAGCTTGATGCGGCCAAGAAAATAATCTACAAAGGAGGATTCTATGAGGGTACTATGCTTGTTGGGGAATATACTGGAATGAGAGTCCAAGAAGCCAAGAGTTCAATCAAGAGCAAGCTTTTAGAGATGGGTGAAGCCGTAATTTACAGCGAGCCTGAGAAGAAGGTCAGGTCTAGATCCGGGGACGAGTGTGTTGTTGCATTGACCGATCAGTGGTATATCACATACGGGGAAACGGAGTGGAGGAAGACTGCAGAGGAATGCCTGGCCGGTATGAATCTATACTCTGATGAGACTCGACACGGCTTTGAGCACACATTGAGTTGGCTTAATCAATGGGCTTGTTCTCGTAATTTTGGCCTTGGGACTCGTATTCCTTGGGACGAGCAGTTTCTTGTGGAATCTTTGTCTGATTCAACACTTTACATGGCATATTATACTGTATGTCATTTTTTCCAGGGAGGCGAGATGTACAGATTAGATAACTCTTTGCTAAAACCGGAGCAGTTGACAGATGAAGTCTGGGATTTCTTATTTTGTGGTGGCCCATACCCCAAATCATCAGATCTATCTTTGTCCCTTCTTAATAAGATGAAACAAGAGTTTGAGTATTGGTACCCTTTTGATCTCCGAGTTTCTGGTAAGGATCTCATCCAAAATCATCTTACATTTTGCATCTATAACCATGCAGCACTTATGCCCAAACACCATTGGCCTCGAGGATTCAGATGCAATGGCCACATAATGCTGAATTCTGAGAAAATGTCCAAGTCCACGGGTAATTTTAGGACATTACGTCAAGCAATTGAGGAGTTTTCAGCTGATGCCACAAGATTCTCTCTTGCTGATGCCGGGGATGGAATGGACGATGCCAATTTCGTTTTCGAAACCGCTAATGCTGCAATTTTACGGCTTACTAAGGAGATATCATGGATGCAAGAGGTTCTTGCTGCCCAGTCGTCATTAAGAGTCGGTCCACCTTCTACGTATGCAGACCGTGTATTTGCAAATGAGATTAATATTGCAGTCAAAATGACAGAAAAGAACTACAACGATTACATGTTTCGAGAAGCTTTGAAAACAGGGTTCTACGATCTTCAGGCTGCTAGAGACGAGTATAGGTTTTCTTGTGGGTCTGGGGGCATGAATCGCGATCTACTTTGGCAGTTCATGGATGTTCAGACACGGCTAATCACTCCCATTTGCCCGCATTATGGTGAATATGTTTGGAAGGAGCTTTTGAAAAAGGACGGGTTTGCTGTTAAAGCGGGATGGCCAGAAGCCGACTTCCCCGATCTTACTCTCCAGAAAGCCAACAAATATTTGCAAGACTCGATCGTGTCAATGAGGAAGCTTCTTCAGAAACAGGTTTCTGGTTCAAAGAAAGGCAAAGTTCAGGTATCAAATAATCAAAACAAGCCAACGACTGGTTTAATATTTGTTAATGAGCAATATGATGGATGGAAAAAGGAATGTTTGAACATACTTCGAAGCAAGTTTGACAACACCACTTGTACCTTTGCACCGGACAAAGACATCCTACAAGCATTGCAGCAGAGTGCAATTGGGCAGGAAGGGAACTTTAAACAAACCCAGAAGCTATGCATGCCTTTCTTGAGGTTTAAGAAGGATGAGGTTATTGCTGTTGGGGTTCAGGCTTTGGATCTGAAGCTGCCATTTGGCGAAATTGAGGTTCTTGTGGAGAACTTGGAGTTGATAAAGCGACAGCTCGGTCTTGAGCGCGTGGAGATTTTGTCTGCTACGGATCCGAATGCTTTTACAAGGGCTGGGCCCCATGCCTCGCTGCTGAAACAGACTCCACCATCACCGGGGAATCCTACCGCCATCTTCATGAGCGAGTAA

Network for GWHGAAZE013879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00133.23	tRNA-synt_1	24	106	1.30E-08
PF00133.23	tRNA-synt_1	196	756	3.90E-29
PF08264.14	Anticodon_1	796	935	9.80E-12

Protein Sequence

>GWHPAAZE013886
MASNTECGRSFARRDLLLEHESKVQKLWEENNVFRADAKDELPKPGEKFFGNFPFPYMNGYLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLSREIQKFGNPPVFPDVTEDKASEPEPKPTEGNQDMLDKFKGKKSKAVSKAGGDKYQWEIMRSYGLSDEEISKFQDPYYWLTYFPPLAVEDLKAFGLGCDWRRTFITTDMNPFFDSFVRWQMRKLKAMGKIVKDLRYTIYSPLDGQPCADHDRASGEGVIPQEYTLIKMEVVPPFPPKLSTLEGKKVYLAAATLRPETMYGQTNSWVLPDGKYGAFEVNETDVFILTERSALNLAYQRLSRVPEKPTCLAELTGYDLIGLPLRSPLAFNEIIYALPMLSVLTDKGTGIVTSVPSDSPDDFMALHDLKAKPAFRAKFGVKDEWVLPFEVIPIISTPEYGDKSAEKICTDMKIKSQNEREKLDAAKKIIYKGGFYEGTMLVGEYTGMRVQEAKSSIKSKLLEMGEAVIYSEPEKKVRSRSGDECVVALTDQWYITYGETEWRKTAEECLAGMNLYSDETRHGFEHTLSWLNQWACSRNFGLGTRIPWDEQFLVESLSDSTLYMAYYTVCHFFQGGEMYRLDNSLLKPEQLTDEVWDFLFCGGPYPKSSDLSLSLLNKMKQEFEYWYPFDLRVSGKDLIQNHLTFCIYNHAALMPKHHWPRGFRCNGHIMLNSEKMSKSTGNFRTLRQAIEEFSADATRFSLADAGDGMDDANFVFETANAAILRLTKEISWMQEVLAAQSSLRVGPPSTYADRVFANEINIAVKMTEKNYNDYMFREALKTGFYDLQAARDEYRFSCGSGGMNRDLLWQFMDVQTRLITPICPHYGEYVWKELLKKDGFAVKAGWPEADFPDLTLQKANKYLQDSIVSMRKLLQKQVSGSKKGKVQVSNNQNKPTTGLIFVNEQYDGWKKECLNILRSKFDNTTCTFAPDKDILQALQQSAIGQEGNFKQTQKLCMPFLRFKKDEVIAVGVQALDLKLPFGEIEVLVENLELIKRQLGLERVEILSATDPNAFTRAGPHASLLKQTPPSPGNPTAIFMSE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01869	LARS, leuS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006429	biological_process	leucyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004823	molecular_function	leucine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0002161	molecular_function	aminoacyl-tRNA editing activity
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.326
	SRR3591706	second leaf	12.411
	SRR3591707	mature leaf	14.230
	SRR3591708	Shoot apex	23.652
	SRR3591709	Stem	23.136
	SRR3591710	White floral bud	34.266
	SRR3591711	White flower	41.561
	SRR3591712	Green floral bud	38.481
	SRR3591713	Yellow flower	25.824
SRP173429	SRR8316895	Juvenile bud stage	23.619
	SRR8316896	Juvenile bud stage	34.619
	SRR8316897	Juvenile bud stage	14.385
	SRR8316894	Third green stage	13.799
	SRR8316900	Third green stage	43.866
	SRR8316901	Third green stage	37.236
	SRR8316898	Complete white stage	12.692
	SRR8316899	Complete white stage	43.928
	SRR8316903	Complete white stage	30.063
	SRR8316902	Silver flowering stage	19.149
	SRR8316904	Silver flowering stage	27.558
	SRR8316905	Silver flowering stage	12.217
	SRR8316906	Gold flowering stage	37.007
	SRR8316907	Gold flowering stage	37.154
	SRR8316908	Gold flowering stage	38.084
SRP132670	SRR6706286	Control	45.976
	SRR6706287	Light intensity 50%	48.994
	SRR6706288	Light intensity 20%	53.267
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.177
	CNS0095593	Slightly white alabastrum(diploid) 2	27.882
	CNS0095594	Slightly white alabastrum(diploid) 3	22.321
	CNS0095595	Whole white alabastrum(diploid) 2	24.633
	CNS0095596	Whole white alabastrum(diploid) 3	25.161
	CNS0095597	Whole white alabastrum(diploid) 4	20.917
	CNS0095598	Silvery flower (diploied) 1	32.365
	CNS0095599	Silvery flower (diploied) 2	27.643
	CNS0095600	Silvery flower (diploied) 3	62.053
	CNS0095601	Golden flower (diploid) 1	23.204
	CNS0095602	Golden flower (diploid) 2	48.572
	CNS0095603	Golden flower (diploid) 3	45.947
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.291
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.164
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.485
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.024
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.433
	CNS0095610	Silvery flower (tetraploid) 1	57.402
	CNS0095611	Silvery flower (tetraploid) 2	55.491
	CNS0095612	Silvery flower (tetraploid) 3	66.182
	CNS0095613	Golden flower (tetraploid) 1	25.729
	CNS0095614	Golden flower (tetraploid) 2	42.920
	CNS0095615	Golden flower (tetraploid) 3	53.950
CRA001975	CRR073297	Stem 1	41.054
	CRR073298	Stem 2	39.967
	CRR073299	Stem 3	45.185
	CRR073300	Leaf 1	47.704
	CRR073301	Leaf 2	43.507
	CRR073302	Leaf 3	45.641
	CRR073303	Juvenile bud 1	52.511
	CRR073304	Juvenile bud 2	36.216
	CRR073305	Juvenile bud 3	67.821
	CRR073306	Third green 1	25.556
	CRR073307	Third green 2	22.030
	CRR073308	Third green 3	29.008
	CRR073309	Second white 1	38.806
	CRR073310	Second white 2	36.889
	CRR073311	Second white 3	42.421
	CRR073312	Silver flowering 1	35.441
	CRR073313	Silver flowering 2	36.490
	CRR073314	Silver flowering 3	31.311
	CRR073315	Gold flowering 1	21.445
	CRR073316	Gold flowering 2	34.049
	CRR073317	Gold flowering 3	30.028
	CRR073318	Tawny withering 1	37.117
	CRR073319	Tawny withering 2	31.517
	CRR073320	Tawny withering 3	35.289