Gene detail

Detail information of GWHGAAZE013852

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009624109.1	1.2991E-120	PREDICTED: high mobility group B protein 9 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SGS2\|HMGB9_ARATH	4E-105	High mobility group B protein 9
trEMBL	tr\|A0A067KKU0\|A0A067KKU0_JATCU	6E-116	Uncharacterized protein {ECO:0000313\|EMBL:KDP36861.1}
TAIR10	AT1G76110.1	1E-85	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1641682	1644075	+
GWHAAZE00000004	mRNA	1641682	1644075	+
GWHAAZE00000004	exon	1641682	1641812	+
GWHAAZE00000004	exon	1641949	1642027	+
GWHAAZE00000004	exon	1642138	1642309	+
GWHAAZE00000004	exon	1643497	1643876	+
GWHAAZE00000004	exon	1643986	1644075	+
GWHAAZE00000004	CDS	1641682	1641812	+
GWHAAZE00000004	CDS	1641949	1642027	+
GWHAAZE00000004	CDS	1642138	1642309	+
GWHAAZE00000004	CDS	1643497	1643876	+
GWHAAZE00000004	CDS	1643986	1644075	+

Transcript Sequence
>GWHTAAZE013866 ATGTCTTCGGGGGTGATCGAAGAGAAGCGTTATCCAGCGGCATTGGCCTCTCATGAAGACATTGTTAGAGACCCTTGGCTTTTTGGTCAATGTCTAACTAATTTCCATTCTGCTTTGGGTACCAAGTTTATGGTACCTGTGATTGGAGGGAAGGAGCTAAATCTGCACGTTCTGTATGCGGAGGTTACCAAGAGGGGTGGTTATGAGAAGGTAGTAACAGAGAAGAAATGGAGGGAAGTGGGATGCGTGTTTGAGTTTTCTCCAACTACAACAAGTGCTTCTTATGCTTTGAGGAAACACTACCATACCTATCTTTACCATTTTCAGCAGCTTTACTTCAATAAGCTTCAAGGCCCACCCTCACTTCTTCCAACCCCACAAGGTCCTATGACTTTCGAAGCAATTGGAACCATCAATGCAAAAATTGACTGCGGTTACTTGGTGTCTGTGAAGTTGGGTTCTGAGACTCTGGCCGGAGTGCTCTATCACCCTGACCAGCCTGGGTCTTCAAAGTCGGTTAGCCGAGGTTGCACGGATATCATTCCGTACAACCCAAATACTCAACGTGCAGGTCGAAGGAGCAGACGAAGAAAAAGAAGGGGAGGAGGTGACCCGGCCCACCCCAAGCCCAATAGGAGTGGTTACAATTTCTTCTTTGCCAAAAAGCACTCGGAGCTCAAATCTCTCTACCCATATAGAGAAAGAGAGTTCACCAAAATGATTGGAGAGTCTTGGAACAATCTCAGCCTCGAAGAGAAGGCTGTTTTTCAGGATTATGGGTTGCAGGATAAAGAAAGATATCAGAGAGAGATGAAGGAGTACAAGGAGCGAGGACAGATGATGCAGTCTTGA

Network for GWHGAAZE013852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.22	ARID	28	108	1.80E-18
PF09011.11	HMG_box_2	206	274	7.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.321
	SRR3591706	second leaf	26.034
	SRR3591707	mature leaf	95.308
	SRR3591708	Shoot apex	3.945
	SRR3591709	Stem	0.092
	SRR3591710	White floral bud	0.134
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.208
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.292
	SRR8316896	Juvenile bud stage	0.986
	SRR8316897	Juvenile bud stage	0.853
	SRR8316894	Third green stage	0.277
	SRR8316900	Third green stage	0.107
	SRR8316901	Third green stage	0.614
	SRR8316898	Complete white stage	0.170
	SRR8316899	Complete white stage	0.364
	SRR8316903	Complete white stage	0.206
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.200
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.422
	SRR6706287	Light intensity 50%	0.422
	SRR6706288	Light intensity 20%	0.359
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.655
	CNS0095593	Slightly white alabastrum(diploid) 2	0.677
	CNS0095594	Slightly white alabastrum(diploid) 3	1.830
	CNS0095595	Whole white alabastrum(diploid) 2	0.696
	CNS0095596	Whole white alabastrum(diploid) 3	0.238
	CNS0095597	Whole white alabastrum(diploid) 4	0.637
	CNS0095598	Silvery flower (diploied) 1	1.645
	CNS0095599	Silvery flower (diploied) 2	0.988
	CNS0095600	Silvery flower (diploied) 3	0.289
	CNS0095601	Golden flower (diploid) 1	1.524
	CNS0095602	Golden flower (diploid) 2	0.530
	CNS0095603	Golden flower (diploid) 3	0.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.817
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.934
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.514
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.238
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.019
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.200
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.131
	CRR073298	Stem 2	0.441
	CRR073299	Stem 3	0.993
	CRR073300	Leaf 1	0.333
	CRR073301	Leaf 2	0.767
	CRR073302	Leaf 3	0.832
	CRR073303	Juvenile bud 1	0.619
	CRR073304	Juvenile bud 2	0.114
	CRR073305	Juvenile bud 3	0.290
	CRR073306	Third green 1	0.114
	CRR073307	Third green 2	0.322
	CRR073308	Third green 3	0.285
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.106
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.037
	CRR073315	Gold flowering 1	34.420
	CRR073316	Gold flowering 2	39.004
	CRR073317	Gold flowering 3	37.280
	CRR073318	Tawny withering 1	1.879
	CRR073319	Tawny withering 2	0.691
	CRR073320	Tawny withering 3	1.334