Gene detail

Detail information of GWHGAAZE013844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002307125.2	0	hypothetical protein POPTR_0005s08520g [Populus trichocarpa]
Swissprot	tr\|O64862\|CTU1_ARATH	0	Cytoplasmic tRNA 2-thiolation protein 1 {ECO:0000255\|HAMAP-Rule:MF_03053}
trEMBL	tr\|B9H5A1\|B9H5A1_POPTR	0	Cytoplasmic tRNA 2-thiolation protein 1 {ECO:0000256\|HAMAP-Rule:MF_03053}
TAIR10	AT2G44270.1	5E-163	repressor of lrx1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1474831	1480499	+
GWHAAZE00000004	mRNA	1474831	1480499	+
GWHAAZE00000004	exon	1474831	1475110	+
GWHAAZE00000004	exon	1475946	1476060	+
GWHAAZE00000004	exon	1476402	1476544	+
GWHAAZE00000004	exon	1477043	1477162	+
GWHAAZE00000004	exon	1478061	1478173	+
GWHAAZE00000004	exon	1478276	1478363	+
GWHAAZE00000004	exon	1478480	1478545	+
GWHAAZE00000004	exon	1478675	1478817	+
GWHAAZE00000004	exon	1478954	1479065	+
GWHAAZE00000004	exon	1479226	1479291	+
GWHAAZE00000004	exon	1480071	1480499	+
GWHAAZE00000004	five_prime_UTR	1474831	1474990	+
GWHAAZE00000004	CDS	1474991	1475110	+
GWHAAZE00000004	CDS	1475946	1476060	+
GWHAAZE00000004	CDS	1476402	1476544	+
GWHAAZE00000004	CDS	1477043	1477162	+
GWHAAZE00000004	CDS	1478061	1478173	+
GWHAAZE00000004	CDS	1478276	1478363	+
GWHAAZE00000004	CDS	1478480	1478545	+
GWHAAZE00000004	CDS	1478675	1478817	+
GWHAAZE00000004	CDS	1478954	1479065	+
GWHAAZE00000004	CDS	1479226	1479291	+
GWHAAZE00000004	CDS	1480071	1480232	+
GWHAAZE00000004	three_prime_UTR	1480233	1480499	+

Transcript Sequence
>GWHTAAZE013858 AACTCTGCTATAGTTGAATCAACATCCCCTCCCTCGGCGGTTGCGTAAACAATAGTCGATTTTTTTCTTTTTAACATATTTACATATACAGAAAGAAAGAACGAAGAGTATCCACCGCCGTTTTCTTATCTATCAATAGTTGTCGGCCTGAAGATAATTGATGGAGGAAGGCGAGGCGGTGGCCGCAAGGACCAAAGAGCAAGGCTGTAGTCGGGTTCGACAGTGCTGCATCTGCAACCAGAGGAGAGCCGCTCTCAAAAGACCCAAAACCCTAGACCAGATTTGCAGGGAGTGTTTTTATGCTGCTTTTGAGGAAGAGATTCATAGGGTAATCATAAACAACCAGCTATTTAATCCCGGGGAACGTATTGCCATTGGAGCTTCTGGTGGGAAAGATTCCACGGTGCTTGCTTATGTGATGTCAGAATTGAATCATCGCCACAATTATGGCCTGGATCTCTTCCTCTTGTCAGTTGATGAAGGGATCACAGGGTACAGGGATGACTCACTTGAAACTGTCAAAAGGAATGAAATTCAATATGGGCTGCCACTAAAAGTTGTTTCGTATAAGGAGCTCTATGGGTGGACAATGGATGAGATAGTGAAGATGATAGGTTTAAAGAACAATTGCACATTTTGTGGTGTATTCCGCCGCCAGGCCCTTGATCGTGGTGCTGCCTTGTTGAAAGTAGACAAGCTAGTCACGGGACATAATGCGGATGATATTGCTGAAACAGTTCTCCTTAACATATTACGAGGTGACATTGCTAGGTTGAGCAGATGCACATCTATAACCACAGGTGAAGATGGACCAATCCCCAGATGCAAGCCTTTCAAGTACACATATGAGAAGGAGATTTTGCCAAATCTTAACCAAATGTTACGTATGCATACTTCAAAAGGCTGGACTACTTCTCCACTGAATTGCATAATTGTGTTGCTGTATTCCTTGCTCTCTTATATTTTTACTTCACCGATAAATTTTGTATTGTTAACTGCAGGTATTTATTCCCCAAATGCTTACCGTGGCTTTGCTCGAGAGTTCATTAAGGATTTAGAAAGGATGAGACCCAGAGCTATACTTGACATTATTAAATCAGGTGAGGATTTCAGGATTGCCACGTCTACAAAAATGCCCGAGCAGGGAACATGTGAGCGATGTGGCTATATTTCTAGTCAGCATGCTCTAGGACCAGTCTGCCCTTCGTTTTGGTCAGGGTTTGATCCTCATCCTCCGTCCACCAGTAAATGGTGTAAAGCCTGTGTTTTGTTGGAGGGACTGAATCGGGGTTTGCCAAAGCTGGGCATTGGGAGAAGCCGAGGACCAAATAGTGAACGGAATAAAGATTTGAAACAAACAGGAAAGAAGAATTTACAGACCAAGGAATGTGGAACTTTGGACTTCTGATTTCCCAACTCAAAGCCTACTATAATCTCAGAGAGAATAAATGGTAGCTCCACAGCGCCAGTAAATTTTGGCTGATTGTCTTATTTGTTGTGAGAACTGATTTAGGATTAAAATGATTTCCCTTCGAATTGATGGATTTAGTGATAGTGGTAATTGCGGAGAATGTAGTTGAGGCCGTGGTAAGGATGGCTGCCTCAAGGATTTTGGTGCTTGTATCATTATAGTTCCCTTGTACGTTTTTATGTAATTAAGTCATTTCTTCTGTTA

Network for GWHGAAZE013844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01171.21	ATP_bind_3	70	232	3.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14168	CTU1, NCS6	Sulfur relay system	map04122

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.427
	SRR3591706	second leaf	16.895
	SRR3591707	mature leaf	13.985
	SRR3591708	Shoot apex	20.769
	SRR3591709	Stem	20.276
	SRR3591710	White floral bud	16.417
	SRR3591711	White flower	17.748
	SRR3591712	Green floral bud	16.148
	SRR3591713	Yellow flower	16.251
SRP173429	SRR8316895	Juvenile bud stage	14.207
	SRR8316896	Juvenile bud stage	20.635
	SRR8316897	Juvenile bud stage	11.241
	SRR8316894	Third green stage	7.653
	SRR8316900	Third green stage	19.496
	SRR8316901	Third green stage	19.696
	SRR8316898	Complete white stage	8.717
	SRR8316899	Complete white stage	27.533
	SRR8316903	Complete white stage	12.642
	SRR8316902	Silver flowering stage	9.991
	SRR8316904	Silver flowering stage	13.212
	SRR8316905	Silver flowering stage	6.828
	SRR8316906	Gold flowering stage	21.628
	SRR8316907	Gold flowering stage	20.155
	SRR8316908	Gold flowering stage	26.378
SRP132670	SRR6706286	Control	19.837
	SRR6706287	Light intensity 50%	18.919
	SRR6706288	Light intensity 20%	19.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.110
	CNS0095593	Slightly white alabastrum(diploid) 2	16.976
	CNS0095594	Slightly white alabastrum(diploid) 3	18.526
	CNS0095595	Whole white alabastrum(diploid) 2	12.617
	CNS0095596	Whole white alabastrum(diploid) 3	11.533
	CNS0095597	Whole white alabastrum(diploid) 4	12.590
	CNS0095598	Silvery flower (diploied) 1	19.787
	CNS0095599	Silvery flower (diploied) 2	15.775
	CNS0095600	Silvery flower (diploied) 3	12.876
	CNS0095601	Golden flower (diploid) 1	16.518
	CNS0095602	Golden flower (diploid) 2	14.465
	CNS0095603	Golden flower (diploid) 3	13.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.982
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.516
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.419
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.615
	CNS0095610	Silvery flower (tetraploid) 1	18.238
	CNS0095611	Silvery flower (tetraploid) 2	12.733
	CNS0095612	Silvery flower (tetraploid) 3	11.174
	CNS0095613	Golden flower (tetraploid) 1	12.267
	CNS0095614	Golden flower (tetraploid) 2	16.322
	CNS0095615	Golden flower (tetraploid) 3	11.703
CRA001975	CRR073297	Stem 1	17.294
	CRR073298	Stem 2	15.463
	CRR073299	Stem 3	13.220
	CRR073300	Leaf 1	13.186
	CRR073301	Leaf 2	14.877
	CRR073302	Leaf 3	11.005
	CRR073303	Juvenile bud 1	10.330
	CRR073304	Juvenile bud 2	6.389
	CRR073305	Juvenile bud 3	12.173
	CRR073306	Third green 1	2.586
	CRR073307	Third green 2	3.333
	CRR073308	Third green 3	4.273
	CRR073309	Second white 1	1.829
	CRR073310	Second white 2	3.493
	CRR073311	Second white 3	5.084
	CRR073312	Silver flowering 1	2.979
	CRR073313	Silver flowering 2	3.988
	CRR073314	Silver flowering 3	2.225
	CRR073315	Gold flowering 1	6.785
	CRR073316	Gold flowering 2	11.307
	CRR073317	Gold flowering 3	5.199
	CRR073318	Tawny withering 1	15.789
	CRR073319	Tawny withering 2	13.297
	CRR073320	Tawny withering 3	14.798