Gene detail

Detail information of GWHGAAZE013780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEN02468.1	0	cyclin-dependent kinase [Camellia sinensis]
Swissprot	tr\|Q8LG64\|CKB22_ARATH	1E-172	Cyclin-dependent kinase B2-2
trEMBL	tr\|G3F4I4\|G3F4I4_CAMSI	0	Cyclin-dependent kinase {ECO:0000313\|EMBL:AEN02468.1}
TAIR10	AT1G20930.1	3E-137	cyclin-dependent kinase B2;2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	365248	367181	+
GWHAAZE00000004	mRNA	365248	367181	+
GWHAAZE00000004	exon	365248	365400	+
GWHAAZE00000004	exon	365662	365787	+
GWHAAZE00000004	exon	365942	366003	+
GWHAAZE00000004	exon	366185	366296	+
GWHAAZE00000004	exon	366378	366462	+
GWHAAZE00000004	exon	366590	366659	+
GWHAAZE00000004	exon	366766	366904	+
GWHAAZE00000004	exon	367006	367181	+
GWHAAZE00000004	CDS	365248	365400	+
GWHAAZE00000004	CDS	365662	365787	+
GWHAAZE00000004	CDS	365942	366003	+
GWHAAZE00000004	CDS	366185	366296	+
GWHAAZE00000004	CDS	366378	366462	+
GWHAAZE00000004	CDS	366590	366659	+
GWHAAZE00000004	CDS	366766	366904	+
GWHAAZE00000004	CDS	367006	367098	+
GWHAAZE00000004	three_prime_UTR	367099	367181	+

Transcript Sequence
>GWHTAAZE013794 ATGGAAGCATTCGAGAAATTGGAGAAGGTAGGGGAGGGAACATACGGAAAGGTGTACAGAGCAAGAGAGAAAGCGACGGGGAAGATAGTTGCCCTCAAGAAGACTCGTCTCCACGAGGACGACGAAGGCGTTCCTCCCACTACCCTCCGCGAGCAAGGCCAGAATAAAGAAGGCAAGACTGTTCTCTATTTGGTGTTTGAATACATGGACACTGATCTCAAGAAATTCATCAAAACCTACCGTCAAACTGGAGACCACATCCCCACTAAAACCATCAAGAGCCTAATGTATCAGCTTTGCAAGGGCGTCGCTTTTTGCCACGGTCACGGTGTATTGCACAGGGACCTTAAGCCTCACAATCTTCTCATGGACCGAAAGACCTCAATGCTTAAAATAGCAGATCTTGGACTCGCTCGAGCTTTTACTCTACCTATTAAGAAGTATACCCATGAGATATTGACACTCTGGTACAGAGCTCCTGAGGTCCTTTTGGGTGCTACCCATTACTCAACAGGAGTGGACATTTGGTCCGTTGGCTCTGAACTAGTCACCAAGCAACCACTGTTCCCCGGAGATTCCGAGCTCCAACAGTTACTACACATTTTCAGGCTGCTGGGTACTCCTAATGAAGAATTGTGGCCAGGAGTAGGCGAGTTAAAGAATTGGCATGAGTACCCCCAGTGGAAACCTCGACAAATGTCATCAGCAGTCTTGAATCTGGATGAGGATGGCCTGGACCTTCTATCTAAAATGCTGCGCTACGAACCATCAAAACGGATTTCGGCCAAGAAAGCTATGGAGCACCCTTACTTCGATGATGTGGACAAGGCCTATCTCTAAAATGCCTTGGATTATTATCTCTCCTTAATCTCTGAAACTGCACTAGTTGTTGTTGGACTACAAAATTCTCTTCTGATTAATTA

Network for GWHGAAZE013780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	52	6.80E-08
PF00069.26	Pkinase	59	271	2.00E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	95.728
	SRR3591706	second leaf	20.444
	SRR3591707	mature leaf	1.080
	SRR3591708	Shoot apex	256.261
	SRR3591709	Stem	36.927
	SRR3591710	White floral bud	4.157
	SRR3591711	White flower	1.552
	SRR3591712	Green floral bud	8.692
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	33.102
	SRR8316896	Juvenile bud stage	23.931
	SRR8316897	Juvenile bud stage	15.779
	SRR8316894	Third green stage	8.404
	SRR8316900	Third green stage	9.282
	SRR8316901	Third green stage	7.699
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.674
	SRR8316903	Complete white stage	1.333
	SRR8316902	Silver flowering stage	0.193
	SRR8316904	Silver flowering stage	0.315
	SRR8316905	Silver flowering stage	0.163
	SRR8316906	Gold flowering stage	0.072
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.076
SRP132670	SRR6706286	Control	7.886
	SRR6706287	Light intensity 50%	8.174
	SRR6706288	Light intensity 20%	10.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.598
	CNS0095593	Slightly white alabastrum(diploid) 2	18.939
	CNS0095594	Slightly white alabastrum(diploid) 3	10.473
	CNS0095595	Whole white alabastrum(diploid) 2	7.722
	CNS0095596	Whole white alabastrum(diploid) 3	3.804
	CNS0095597	Whole white alabastrum(diploid) 4	3.958
	CNS0095598	Silvery flower (diploied) 1	16.331
	CNS0095599	Silvery flower (diploied) 2	13.365
	CNS0095600	Silvery flower (diploied) 3	3.612
	CNS0095601	Golden flower (diploid) 1	4.117
	CNS0095602	Golden flower (diploid) 2	2.675
	CNS0095603	Golden flower (diploid) 3	3.190
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.203
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.150
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.275
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.635
	CNS0095610	Silvery flower (tetraploid) 1	0.328
	CNS0095611	Silvery flower (tetraploid) 2	1.113
	CNS0095612	Silvery flower (tetraploid) 3	1.221
	CNS0095613	Golden flower (tetraploid) 1	0.049
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.141
CRA001975	CRR073297	Stem 1	35.437
	CRR073298	Stem 2	40.381
	CRR073299	Stem 3	53.784
	CRR073300	Leaf 1	10.097
	CRR073301	Leaf 2	9.153
	CRR073302	Leaf 3	6.524
	CRR073303	Juvenile bud 1	4.260
	CRR073304	Juvenile bud 2	1.050
	CRR073305	Juvenile bud 3	3.819
	CRR073306	Third green 1	0.698
	CRR073307	Third green 2	0.391
	CRR073308	Third green 3	0.658
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.072
	CRR073311	Second white 3	0.055
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.835
	CRR073316	Gold flowering 2	0.945
	CRR073317	Gold flowering 3	1.146
	CRR073318	Tawny withering 1	49.652
	CRR073319	Tawny withering 2	30.808
	CRR073320	Tawny withering 3	53.632