Detail information of GWHGAAZE013774


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277331.30PREDICTED: protein LYK5 [Vitis vinifera]
Swissprottr|O22808|LYK5_ARATH0Protein LYK5 (Precursor)
trEMBLtr|F6I6Y0|F6I6Y0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62698.1}
TAIR10AT2G33580.17E-147Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene120187122382+
GWHAAZE00000004mRNA120187122382+
GWHAAZE00000004exon120187122382+
GWHAAZE00000004CDS120187122382+
Transcript Sequence

Network for GWHGAAZE013774

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01476.21LysM2162541.60E-05
PF00069.26Pkinase4047025.60E-35
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LysM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE013774.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.836
SRR3591706second leaf13.752
SRR3591707mature leaf16.924
SRR3591708Shoot apex18.981
SRR3591709Stem44.850
SRR3591710White floral bud11.301
SRR3591711White flower21.806
SRR3591712Green floral bud12.373
SRR3591713Yellow flower9.938
SRP173429 SRR8316895Juvenile bud stage 20.290
SRR8316896Juvenile bud stage 11.016
SRR8316897Juvenile bud stage 4.871
SRR8316894Third green stage 6.505
SRR8316900Third green stage 8.802
SRR8316901Third green stage 13.000
SRR8316898Complete white stage 1.104
SRR8316899Complete white stage 13.292
SRR8316903Complete white stage 2.085
SRR8316902Silver flowering stage2.062
SRR8316904Silver flowering stage2.404
SRR8316905Silver flowering stage1.220
SRR8316906Gold flowering stage 4.668
SRR8316907Gold flowering stage 3.953
SRR8316908Gold flowering stage 3.307
SRP132670SRR6706286Control7.835
SRR6706287Light intensity 50%7.946
SRR6706288Light intensity 20%7.163
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.290
CNS0095593Slightly white alabastrum(diploid) 214.107
CNS0095594Slightly white alabastrum(diploid) 311.371
CNS0095595Whole white alabastrum(diploid) 28.623
CNS0095596Whole white alabastrum(diploid) 33.089
CNS0095597Whole white alabastrum(diploid) 47.118
CNS0095598Silvery flower (diploied) 129.178
CNS0095599Silvery flower (diploied) 222.874
CNS0095600Silvery flower (diploied) 312.738
CNS0095601Golden flower (diploid) 120.121
CNS0095602Golden flower (diploid) 218.046
CNS0095603Golden flower (diploid) 317.702
CNS0095604Slightly white alabastrum(tetraploid) 10.513
CNS0095605Slightly white alabastrum(tetraploid) 20.600
CNS0095606Slightly white alabastrum(tetraploid) 31.384
CNS0095607Whole white alabastrum(tetraploid) 10.234
CNS0095608Whole white alabastrum(tetraploid) 20.244
CNS0095609Whole white alabastrum(tetraploid) 30.229
CNS0095610Silvery flower (tetraploid) 10.547
CNS0095611Silvery flower (tetraploid) 20.463
CNS0095612Silvery flower (tetraploid) 30.355
CNS0095613Golden flower (tetraploid) 10.539
CNS0095614Golden flower (tetraploid) 20.573
CNS0095615Golden flower (tetraploid) 30.176
CRA001975CRR073297Stem 113.320
CRR073298Stem 214.567
CRR073299Stem 313.875
CRR073300Leaf 119.646
CRR073301Leaf 231.777
CRR073302Leaf 312.401
CRR073303Juvenile bud 114.723
CRR073304Juvenile bud 215.035
CRR073305Juvenile bud 343.085
CRR073306Third green 13.641
CRR073307Third green 22.409
CRR073308Third green 33.018
CRR073309Second white 13.497
CRR073310Second white 23.063
CRR073311Second white 34.615
CRR073312Silver flowering 110.398
CRR073313Silver flowering 27.760
CRR073314Silver flowering 35.409
CRR073315Gold flowering 110.370
CRR073316Gold flowering 214.254
CRR073317Gold flowering 315.978
CRR073318Tawny withering 110.270
CRR073319Tawny withering 216.553
CRR073320Tawny withering 310.339