Gene detail

Detail information of GWHGAAZE013759

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631587.1	9.5944E-143	PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera]
Swissprot	tr\|P93008\|RH21_ARATH	9E-136	DEAD-box ATP-dependent RNA helicase 21
trEMBL	tr\|F6I1B2\|F6I1B2_VITVI	4E-143	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60728.1}
TAIR10	AT2G33730.1	7E-113	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107754066	107755106	+
GWHAAZE00000003	mRNA	107754066	107755106	+
GWHAAZE00000003	exon	107754066	107754325	+
GWHAAZE00000003	exon	107754377	107755106	+
GWHAAZE00000003	CDS	107754066	107754325	+
GWHAAZE00000003	CDS	107754377	107755106	+

Transcript Sequence
>GWHTAAZE013773 AGGACGAAACTGTCAAGTTTGCTCACTACTTGGGTATTAAGGTGGTTTCAATTGTGGGCGGGCAGTCCATCGAGGAGCAGGGTTTCAGGATCAGGCAAGGTTGTGATTGCCACTCCCGGATGTCTAATTGATTTCTTGGAGAGGCGCTACGCTGTCCTGAACCAGTGTAATTATGTTGTCCTCGACGAGGCCGATCGCATGATTGATATGGGTTTTGAACCGCAAGTTGTCGGTGTCTTGGATGCGATGCCCTCTAGCAAGACCACTTATATGTTCAGTGCTACCATACCACCAGCCGTGGAGCGTCTTGCAAGGAAGTACTTGAGAAATCCGGTTGTAGTGACAATTGTAACTGCTGGAAAGGCAACTGACCTCATTACTCAGCACGTGATTATGATGAAGGAATTAGAGAAAATGTATAGGTTGCAGAAGTTACTGGACGAACTCGGAGACAGGACGGCAATAGTATTGATAAACACGAAAAAGTCGGCTGATGGGCTTGCCAAGAATTTGGATAAGTCGGGATACCGGGTGACAACTTTGCATGGTGGCAAGTCACAGGACCAGAGAGAAATCAGCCTTGAAGGCTTCAGGAACAAGAGATACAACGTCTTGGTTGCCACTGATGTAGCAGGGCGTGGGATTGATATACCTGACGTGGCTCATGTCATAAATTTTGATATGCCTGGTAATATCGAGATGTACACTCACCGAATTGGACGAACAGGTCGTGCTGGGAAGACAGGTATAGCCACTACATTTCTGACATTCCATGACAGTGAAGATTTGATGTCTTCTATGATCTCAAGCAGATGCTTATTCAGAGTAACAGTCCTGTACCTCCTGAGCTGGCTAGACACGAAGCTTCGAAATTCAAGCCGGGAACAATTCCCGACAGGCCACCTAGACGTAATGAAACTGTGCTTGTTCATTGAGGTAAACATCCCATATAATCTTCTGCATTATTGTTTTTTGCATTATTGTTTTTAG

Network for GWHGAAZE013759

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	26	103	3.30E-15
PF00271.32	Helicase_C	138	246	1.70E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12858	DDX23, PRP28	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.388
	SRR3591706	second leaf	1.075
	SRR3591707	mature leaf	3.374
	SRR3591708	Shoot apex	1.952
	SRR3591709	Stem	3.834
	SRR3591710	White floral bud	4.619
	SRR3591711	White flower	10.072
	SRR3591712	Green floral bud	0.162
	SRR3591713	Yellow flower	3.098
SRP173429	SRR8316895	Juvenile bud stage	4.734
	SRR8316896	Juvenile bud stage	5.747
	SRR8316897	Juvenile bud stage	2.652
	SRR8316894	Third green stage	2.843
	SRR8316900	Third green stage	5.149
	SRR8316901	Third green stage	6.683
	SRR8316898	Complete white stage	4.064
	SRR8316899	Complete white stage	8.938
	SRR8316903	Complete white stage	8.915
	SRR8316902	Silver flowering stage	5.783
	SRR8316904	Silver flowering stage	12.371
	SRR8316905	Silver flowering stage	4.796
	SRR8316906	Gold flowering stage	14.842
	SRR8316907	Gold flowering stage	10.088
	SRR8316908	Gold flowering stage	13.142
SRP132670	SRR6706286	Control	10.471
	SRR6706287	Light intensity 50%	10.995
	SRR6706288	Light intensity 20%	9.820
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.210
	CNS0095593	Slightly white alabastrum(diploid) 2	0.933
	CNS0095594	Slightly white alabastrum(diploid) 3	1.899
	CNS0095595	Whole white alabastrum(diploid) 2	2.777
	CNS0095596	Whole white alabastrum(diploid) 3	1.335
	CNS0095597	Whole white alabastrum(diploid) 4	1.976
	CNS0095598	Silvery flower (diploied) 1	7.849
	CNS0095599	Silvery flower (diploied) 2	4.414
	CNS0095600	Silvery flower (diploied) 3	15.325
	CNS0095601	Golden flower (diploid) 1	6.157
	CNS0095602	Golden flower (diploid) 2	12.303
	CNS0095603	Golden flower (diploid) 3	13.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.530
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.940
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.487
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.882
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.777
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.217
	CNS0095610	Silvery flower (tetraploid) 1	12.054
	CNS0095611	Silvery flower (tetraploid) 2	15.090
	CNS0095612	Silvery flower (tetraploid) 3	13.532
	CNS0095613	Golden flower (tetraploid) 1	5.563
	CNS0095614	Golden flower (tetraploid) 2	9.411
	CNS0095615	Golden flower (tetraploid) 3	18.086
CRA001975	CRR073297	Stem 1	13.094
	CRR073298	Stem 2	12.027
	CRR073299	Stem 3	4.626
	CRR073300	Leaf 1	11.743
	CRR073301	Leaf 2	10.752
	CRR073302	Leaf 3	3.088
	CRR073303	Juvenile bud 1	3.404
	CRR073304	Juvenile bud 2	2.690
	CRR073305	Juvenile bud 3	5.355
	CRR073306	Third green 1	2.922
	CRR073307	Third green 2	2.374
	CRR073308	Third green 3	4.477
	CRR073309	Second white 1	1.417
	CRR073310	Second white 2	4.234
	CRR073311	Second white 3	5.441
	CRR073312	Silver flowering 1	3.787
	CRR073313	Silver flowering 2	3.180
	CRR073314	Silver flowering 3	5.236
	CRR073315	Gold flowering 1	2.796
	CRR073316	Gold flowering 2	7.353
	CRR073317	Gold flowering 3	1.462
	CRR073318	Tawny withering 1	5.499
	CRR073319	Tawny withering 2	3.334
	CRR073320	Tawny withering 3	3.037