Gene detail

Detail information of GWHGAAZE013746

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP23290.1	0	hypothetical protein JCGZ_23123 [Jatropha curcas]
Swissprot	tr\|Q6Z1G7\|ODPB1_ORYSJ	0	Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial (Precursor)
trEMBL	tr\|A0A067JTH6\|A0A067JTH6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP23290.1}
TAIR10	AT5G50850.1	4E-152	Transketolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107512670	107516671	+
GWHAAZE00000003	mRNA	107512670	107516671	+
GWHAAZE00000003	exon	107512670	107512750	+
GWHAAZE00000003	exon	107512835	107512855	+
GWHAAZE00000003	exon	107512978	107513043	+
GWHAAZE00000003	exon	107513209	107513262	+
GWHAAZE00000003	exon	107513766	107513891	+
GWHAAZE00000003	exon	107514390	107514523	+
GWHAAZE00000003	exon	107514627	107514699	+
GWHAAZE00000003	exon	107514814	107514879	+
GWHAAZE00000003	exon	107515867	107515905	+
GWHAAZE00000003	exon	107516037	107516161	+
GWHAAZE00000003	exon	107516311	107516425	+
GWHAAZE00000003	exon	107516609	107516671	+
GWHAAZE00000003	CDS	107512670	107512750	+
GWHAAZE00000003	CDS	107512835	107512855	+
GWHAAZE00000003	CDS	107512978	107513043	+
GWHAAZE00000003	CDS	107513209	107513262	+
GWHAAZE00000003	CDS	107513766	107513891	+
GWHAAZE00000003	CDS	107514390	107514523	+
GWHAAZE00000003	CDS	107514627	107514699	+
GWHAAZE00000003	CDS	107514814	107514879	+
GWHAAZE00000003	CDS	107515867	107515905	+
GWHAAZE00000003	CDS	107516037	107516161	+
GWHAAZE00000003	CDS	107516311	107516425	+
GWHAAZE00000003	CDS	107516609	107516671	+

Transcript Sequence
>GWHTAAZE013760 ATGCAAGTGAGAGATGCTCTAAACTCTGCCCTTGACGAGGAAATGTCTGCCGATCCTAGGGTCTTTGTAATGGGTGAAGAGTTAAGGTCGGAGAATATCAAGGTTACCAAAGGAGGATTATTAGGGAAGTATGGCCCCGACAGGGTTGTTGACACCCGCATTACGGAGGCTGGCTTCACTGGGATTGGAGTTGGTGCTGCTTATTATGGTCCAAGGCCTGTTGCAATTGATCACATCATTAACTCTGCTGCAAAATCAAACTACATGTCTGCTGGCCAGATTAATGTGCCTATTGTTTTCAGAGGACCAAATGGTGCTGCTGCTCGTGTTGGTGCCCAACATTCCCAGTGTTATGCAGCATGGTATGGTGCATGCCCTGGGTTAAAAGTTCTAGCCCCATATTCGTCCGAAGATGCTCGTGGACTTCTGAAAGCTGCCATCAGAGACCCCGATCCTGTTGTGTTCCTTGAAAATGAATTATTATATGGCGAGTCCTTCACTGTTTCAGATGAAGTTCTCGATTCAAGTTTTTGCCTTCCCATAGGGAAAGCTAAGATTGAGAAAGAAGGGAAGGATGTAACAATTACAGCTTTTTCAAAAATGGTTGGCTATGCTCTCAAGGCAGCTGAGATACTTGCAAAGGGAGGGATAAGTGCTGAGGTGATAAATCTGCGCTCAATTAGGCCATTGGATAGACCTGCGATTAATGCTTCAGTCAGGAAAACTAACAGGCTTGTAACGGTTGAAGAAGGGTTTCCTCAACATGGTGTTGGCGCTGAAATCTGTACATCTGTTTTTGAGGAAAGCTTTGGTTATCTTGATGCTCCAGTGGAGAGGATTGCTGGGGCTGATGTCCCTATGCCTTATGCTGCTAATCTCGAGAGAATGGCTGTTCCACAGGTAGAAGATATTGTCCGTGCAGCTAAGAGATCGTGCTACAGATCTGTGCCTGCAACTGTTTAA

Network for GWHGAAZE013746

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02779.25	Transket_pyr	2	163	3.80E-34
PF02780.21	Transketolase_C	182	304	7.30E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00162	PDHB, pdhB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		HIF-1 signaling pathway	map04066
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.588
	SRR3591706	second leaf	1.159
	SRR3591707	mature leaf	1.407
	SRR3591708	Shoot apex	4.496
	SRR3591709	Stem	1.219
	SRR3591710	White floral bud	1.306
	SRR3591711	White flower	0.358
	SRR3591712	Green floral bud	2.985
	SRR3591713	Yellow flower	0.481
SRP173429	SRR8316895	Juvenile bud stage	2.995
	SRR8316896	Juvenile bud stage	3.215
	SRR8316897	Juvenile bud stage	1.122
	SRR8316894	Third green stage	1.336
	SRR8316900	Third green stage	2.952
	SRR8316901	Third green stage	2.909
	SRR8316898	Complete white stage	0.193
	SRR8316899	Complete white stage	1.426
	SRR8316903	Complete white stage	0.698
	SRR8316902	Silver flowering stage	0.284
	SRR8316904	Silver flowering stage	0.117
	SRR8316905	Silver flowering stage	0.134
	SRR8316906	Gold flowering stage	0.254
	SRR8316907	Gold flowering stage	0.080
	SRR8316908	Gold flowering stage	0.412
SRP132670	SRR6706286	Control	2.593
	SRR6706287	Light intensity 50%	3.088
	SRR6706288	Light intensity 20%	3.714
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.368
	CNS0095593	Slightly white alabastrum(diploid) 2	3.428
	CNS0095594	Slightly white alabastrum(diploid) 3	3.333
	CNS0095595	Whole white alabastrum(diploid) 2	4.385
	CNS0095596	Whole white alabastrum(diploid) 3	6.027
	CNS0095597	Whole white alabastrum(diploid) 4	2.962
	CNS0095598	Silvery flower (diploied) 1	3.567
	CNS0095599	Silvery flower (diploied) 2	2.053
	CNS0095600	Silvery flower (diploied) 3	0.421
	CNS0095601	Golden flower (diploid) 1	1.124
	CNS0095602	Golden flower (diploid) 2	0.419
	CNS0095603	Golden flower (diploid) 3	1.152
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.373
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.738
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.787
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.656
	CNS0095610	Silvery flower (tetraploid) 1	0.823
	CNS0095611	Silvery flower (tetraploid) 2	0.628
	CNS0095612	Silvery flower (tetraploid) 3	0.329
	CNS0095613	Golden flower (tetraploid) 1	0.385
	CNS0095614	Golden flower (tetraploid) 2	0.454
	CNS0095615	Golden flower (tetraploid) 3	0.248
CRA001975	CRR073297	Stem 1	3.329
	CRR073298	Stem 2	4.125
	CRR073299	Stem 3	3.617
	CRR073300	Leaf 1	2.518
	CRR073301	Leaf 2	2.712
	CRR073302	Leaf 3	2.578
	CRR073303	Juvenile bud 1	1.750
	CRR073304	Juvenile bud 2	0.980
	CRR073305	Juvenile bud 3	1.513
	CRR073306	Third green 1	0.410
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.152
	CRR073309	Second white 1	0.250
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.417
	CRR073312	Silver flowering 1	0.034
	CRR073313	Silver flowering 2	0.079
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	8.992
	CRR073316	Gold flowering 2	7.301
	CRR073317	Gold flowering 3	4.090
	CRR073318	Tawny withering 1	1.112
	CRR073319	Tawny withering 2	0.411
	CRR073320	Tawny withering 3	0.466