Gene detail

Detail information of GWHGAAZE013702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045046.1	0	Leucine-rich repeat protein kinase family protein [Theobroma cacao]
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	4E-150	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|A0A061E895\|A0A061E895_THECC	0	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY00878.1}
TAIR10	AT1G67510.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106608827	106611866	+
GWHAAZE00000003	mRNA	106608827	106611866	+
GWHAAZE00000003	exon	106608827	106610390	+
GWHAAZE00000003	exon	106611013	106611075	+
GWHAAZE00000003	exon	106611226	106611866	+
GWHAAZE00000003	CDS	106608827	106610390	+
GWHAAZE00000003	CDS	106611013	106611075	+
GWHAAZE00000003	CDS	106611226	106611866	+

Transcript Sequence
>GWHTAAZE013716 ATGTTGAAACTCTATTATTATGTATTCATATTTTTCTTGGTGTTCTTGGACACCGTTAGTGTTAATTTTGTCTTTTCTCTCTCCGCCGACGGTCTCTCTCTCCTCTCTCTGAAATCAGCCGTGGACTCCGACCAAGTCAACTTCCCTGACTGGAACGAGAACGACGACTCACCGTGCCGATGGACCGGAATCTCCTGCATGAACATCTCCGGCTTTTCCGACCCCCGCGTCGTCGGAATCTCCTTTGCCGGGAAGAATCTCCGGGGATATATTCCCTCCGAGCTTGGAACTCTAGTGTACCTCCGGCGACTCAACCTCCACGGCAACAATTTCTACGGCTCCATACCGGATCAGCTCTTCAATGCTTCTTCACTCCACAGTATATTCCTCTACGGTAACAATCTCTCCGGTTCCCTCCCTCCTTCCACTTGCAACCTACCTCTCCTTCAAAACCTCGATCTCTCCAACAATTCTTTCTCAGGAGCTATCCCAAGGGATCTCCGGAACTGCCGGAAGTTGCAGCGCCTGATTCTCGCAGCAAACAATTTCTCCGGAGAGATTCCGGCTGGAATTTTTCCGGCGATGGCGAATTTGGTTCAGCTGGATCTTTCGTCAAATTCTCTCAACGGCTCTATTCCCGAAGACATAGGCGAATTGAAATCGTTATCGGGAACTCTGAATCTCTCTTTCAACCATTTATCGGGGAAAGTTCCTAAAACATTGGGGGACTTACCAATGACAGTTAGTTTTGATCTTCGGAACAATCAATTGAGTGGTGAGATACCTCAATCGGGCTCATTCGCGAGTCAAGGTCCAACTGCGTTTTTGAATAATCCACTTTTATGCGGTTTTCCTCTAAAAAAGTCCTGCATGAATGATACAGAAAGTTCGCCAAAGAGCCAGAATTTGCAGCCGGAATCTGTCAGCAGCAATTCGAGAAAAGGCCTAAAGCCGGGTTTGATCATATTGATATCAGTGGCTGATGCTGCTGGAGTGGCATTTATTGGCCTAGTTATAGTTTATGTTTATTGGAAGAGAAAGGACGACTCTCACGGTTGTAACTGCAGCTGCCCGGGCAAAGGGAAATTTGGCAGTAACGACAAAAGAATGCGGTGTTCATTGCCTTGCCTTGGTGGATATCGTAGTTATGAATCAGAACTGGAGTCTGAGAAAGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGGAGTAGGAGTAGGAGTGGGAGTGGGAGTGGGAGTGGAGGAGAAGGAGTATTAGTGGCAATAGATAAAGGGTTTAGTTTTGAGTTGGACGAGCTTTTGAGAGCGTCGGCTTATGTGTTGGGAAAGAGTGGATTGGGGATAGTGTATAAGGTAGTGTTGGGGAATGGGGTGCCGGTGGCGGTGAGGAGGCTGGGGGAAGGTGGGGAACAGAGGTACAAGGAATTTGTGGCGGAGATCCAATCAATTGGGAGGCTAAAGCATCCAAATATTGTCAAGTTGAGGGCTTATTATTGGGCTCCTGATGAGAAGCTTCTCATTAGTGACTTCATTTCTAATGGCAACTTGGCTTGTGCTCTTCGCGGTCATTATATCAGGTTAGGTGGTGACTTGGTACAGCTGTTGGGGTGGGGCATTATGGCGGCTTGGAAAACAAGTCAGCCTTCATCAAACCTATTGTGGTCAACCAGGCTAAAAATTGCAAAAGGAACAGCTCGGGGCTTGGCCTACCTCCACGAATGTAGTCCAGGAAAATTCGTCCATGGAGACATCAAGCCATCCAGCATTCTCCTTGACAACGAACTCCAACCATACATTTCTGATTTTGGGCTTAACCATCTCATTAACATAACAGGCAACAATCCTTCATCCTCTGGTGGCTTTATAGGCGGAGCCTTTTCTTATTTGAAGTTGGTCCAACATGAGCAAACCAACAACTATAGAGCACCAGAGGCTCGTGTCCCTAATAGCCGACCTACCCAAAAATGGGATGTCTACTCATTCGGGGTTGTCTTGCTTGAATTGTTAACAGGCAAGTCTCCAGAGCTTTCATCTCCGAGCACATCTACTTCCACCGAGGTCGGGGATTTAGTGAGGTGGGTAAGGAAAGGATTTGAAGAGGAAATCCTATTATCGGATATGGTAGACCCAATGTTGCTTCAAGAAGTACACGCTAAGAAGGAAGTGTTGGCCGTGTTTCACATAGCCCTTGCATGCACAGAGGCAGACCCTGAGATTCGGCCTAGGATGAAAACTGTTAAAGAAAATCTTGAGAGAATTGGAACATAA

Network for GWHGAAZE013702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	66	1.20E-08
PF00069.26	Pkinase	440	682	7.60E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.628
	SRR3591706	second leaf	4.810
	SRR3591707	mature leaf	5.425
	SRR3591708	Shoot apex	4.748
	SRR3591709	Stem	22.057
	SRR3591710	White floral bud	2.389
	SRR3591711	White flower	3.140
	SRR3591712	Green floral bud	1.473
	SRR3591713	Yellow flower	1.340
SRP173429	SRR8316895	Juvenile bud stage	2.853
	SRR8316896	Juvenile bud stage	2.970
	SRR8316897	Juvenile bud stage	0.871
	SRR8316894	Third green stage	0.872
	SRR8316900	Third green stage	2.182
	SRR8316901	Third green stage	2.262
	SRR8316898	Complete white stage	0.973
	SRR8316899	Complete white stage	3.658
	SRR8316903	Complete white stage	2.417
	SRR8316902	Silver flowering stage	0.456
	SRR8316904	Silver flowering stage	0.996
	SRR8316905	Silver flowering stage	0.187
	SRR8316906	Gold flowering stage	1.154
	SRR8316907	Gold flowering stage	0.829
	SRR8316908	Gold flowering stage	0.810
SRP132670	SRR6706286	Control	3.382
	SRR6706287	Light intensity 50%	2.297
	SRR6706288	Light intensity 20%	2.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.447
	CNS0095593	Slightly white alabastrum(diploid) 2	2.506
	CNS0095594	Slightly white alabastrum(diploid) 3	1.014
	CNS0095595	Whole white alabastrum(diploid) 2	1.441
	CNS0095596	Whole white alabastrum(diploid) 3	0.954
	CNS0095597	Whole white alabastrum(diploid) 4	1.488
	CNS0095598	Silvery flower (diploied) 1	6.574
	CNS0095599	Silvery flower (diploied) 2	2.637
	CNS0095600	Silvery flower (diploied) 3	2.243
	CNS0095601	Golden flower (diploid) 1	3.592
	CNS0095602	Golden flower (diploid) 2	5.764
	CNS0095603	Golden flower (diploid) 3	5.144
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.536
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.644
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.161
	CNS0095610	Silvery flower (tetraploid) 1	1.431
	CNS0095611	Silvery flower (tetraploid) 2	1.865
	CNS0095612	Silvery flower (tetraploid) 3	0.888
	CNS0095613	Golden flower (tetraploid) 1	1.342
	CNS0095614	Golden flower (tetraploid) 2	2.937
	CNS0095615	Golden flower (tetraploid) 3	0.864
CRA001975	CRR073297	Stem 1	6.242
	CRR073298	Stem 2	4.722
	CRR073299	Stem 3	6.076
	CRR073300	Leaf 1	2.570
	CRR073301	Leaf 2	2.071
	CRR073302	Leaf 3	2.947
	CRR073303	Juvenile bud 1	2.069
	CRR073304	Juvenile bud 2	1.223
	CRR073305	Juvenile bud 3	4.712
	CRR073306	Third green 1	0.258
	CRR073307	Third green 2	0.425
	CRR073308	Third green 3	0.341
	CRR073309	Second white 1	0.133
	CRR073310	Second white 2	0.219
	CRR073311	Second white 3	0.059
	CRR073312	Silver flowering 1	0.100
	CRR073313	Silver flowering 2	0.269
	CRR073314	Silver flowering 3	0.345
	CRR073315	Gold flowering 1	2.612
	CRR073316	Gold flowering 2	4.009
	CRR073317	Gold flowering 3	2.472
	CRR073318	Tawny withering 1	9.060
	CRR073319	Tawny withering 2	4.685
	CRR073320	Tawny withering 3	9.879