Gene detail

Detail information of GWHGAAZE013701

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004239661.1	0	PREDICTED: proteasome subunit beta type-5 [Solanum lycopersicum]
Swissprot	tr\|O24361\|PSB5_SPIOL	2E-171	Proteasome subunit beta type-5 (Precursor)
trEMBL	tr\|K4C2U0\|K4C2U0_SOLLC	0	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT3G26340.1	2E-134	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106601859	106604988	+
GWHAAZE00000003	mRNA	106601859	106604988	+
GWHAAZE00000003	exon	106601859	106601975	+
GWHAAZE00000003	exon	106602081	106602210	+
GWHAAZE00000003	exon	106602976	106603082	+
GWHAAZE00000003	exon	106603641	106603775	+
GWHAAZE00000003	exon	106603866	106603969	+
GWHAAZE00000003	exon	106604665	106604765	+
GWHAAZE00000003	exon	106604861	106604988	+
GWHAAZE00000003	CDS	106601859	106601975	+
GWHAAZE00000003	CDS	106602081	106602210	+
GWHAAZE00000003	CDS	106602976	106603082	+
GWHAAZE00000003	CDS	106603641	106603775	+
GWHAAZE00000003	CDS	106603866	106603969	+
GWHAAZE00000003	CDS	106604665	106604765	+
GWHAAZE00000003	CDS	106604861	106604988	+

Transcript Sequence
>GWHTAAZE013715 ATGAAGATCGATTTTAGTGGACTTGAATCGAGTGCACCGTTCACCGGAGCAACTAATGAGTTGTTTGATGATGGGTTTACAACTGCCCCGTCTTTCCAGCTTCCGAATGCCACTGACTTCGATGGCTTTCAGAAACAAGCTATCCAAATGGTGAAGCCAGCAAAGGGTACGACAACACTGGCTTTTATTTTTAAGGGGGGAGTGATGGTTGCCGCTGATTCTCGTGCTAGCATGGGAGGATATATTTCATCGCAATCTGTGAAGAAAATCATTGAAATTAATCCCTACATGCTTGGTACAATGGCTGGAGGTGCTGCTGATTGCCAGTTCTGGCACAGGAATTTGGGAATTAAGTGCCGGTTGCATGAGCTTGCAAATAAGCGAAGAATTTCAGTAACAGGGGCTTCAAAGTTGCTGGCAAACATTCTATATTCTTACCGTGGTATGGGTTTGTCTGTTGGGACAATGATTGCTGGTTGGGATGAAAAGGGTCCTGGCCTTTATTATGTGGACAGTGAAGGGGGTCGGCTAAAAGGCACAAAATTCTCTGTTGGATCCGGTTCACCGTATGCTTATGGTGTTTTGGATAGCGGGTACCGTTATGATATGTCTGTAGAAGAAGCTGCCGAGCTGGCTAGGCGATCCATTTATCACGCCACATTCCGTGATGGAGCCAGTGGTGGTGTTGCTAGCGTTTATCATGTTGGACCGAATGGATGGAAGAAGATATCTGGGGACGATGTAGGAGAACTTCACTACATGTACTATCCAGTTGAACCAACAGTTGTGGAACAGGAAATGACTGAAGTGGCAGTAGCCTAA

Network for GWHGAAZE013701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	55	235	9.60E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02737	PSMB5	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	327.977
	SRR3591706	second leaf	161.567
	SRR3591707	mature leaf	138.640
	SRR3591708	Shoot apex	272.944
	SRR3591709	Stem	302.262
	SRR3591710	White floral bud	251.331
	SRR3591711	White flower	297.717
	SRR3591712	Green floral bud	255.589
	SRR3591713	Yellow flower	336.217
SRP173429	SRR8316895	Juvenile bud stage	152.951
	SRR8316896	Juvenile bud stage	216.448
	SRR8316897	Juvenile bud stage	99.447
	SRR8316894	Third green stage	85.687
	SRR8316900	Third green stage	302.829
	SRR8316901	Third green stage	295.361
	SRR8316898	Complete white stage	139.918
	SRR8316899	Complete white stage	393.843
	SRR8316903	Complete white stage	201.806
	SRR8316902	Silver flowering stage	139.546
	SRR8316904	Silver flowering stage	169.740
	SRR8316905	Silver flowering stage	92.148
	SRR8316906	Gold flowering stage	309.813
	SRR8316907	Gold flowering stage	335.652
	SRR8316908	Gold flowering stage	361.181
SRP132670	SRR6706286	Control	504.945
	SRR6706287	Light intensity 50%	491.899
	SRR6706288	Light intensity 20%	499.533
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	263.415
	CNS0095593	Slightly white alabastrum(diploid) 2	288.320
	CNS0095594	Slightly white alabastrum(diploid) 3	229.801
	CNS0095595	Whole white alabastrum(diploid) 2	237.099
	CNS0095596	Whole white alabastrum(diploid) 3	229.861
	CNS0095597	Whole white alabastrum(diploid) 4	203.129
	CNS0095598	Silvery flower (diploied) 1	249.110
	CNS0095599	Silvery flower (diploied) 2	234.895
	CNS0095600	Silvery flower (diploied) 3	340.432
	CNS0095601	Golden flower (diploid) 1	225.877
	CNS0095602	Golden flower (diploid) 2	324.589
	CNS0095603	Golden flower (diploid) 3	313.208
	CNS0095604	Slightly white alabastrum(tetraploid) 1	253.657
	CNS0095605	Slightly white alabastrum(tetraploid) 2	217.731
	CNS0095606	Slightly white alabastrum(tetraploid) 3	333.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	179.021
	CNS0095608	Whole white alabastrum(tetraploid) 2	190.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	268.087
	CNS0095610	Silvery flower (tetraploid) 1	369.343
	CNS0095611	Silvery flower (tetraploid) 2	342.950
	CNS0095612	Silvery flower (tetraploid) 3	322.645
	CNS0095613	Golden flower (tetraploid) 1	374.726
	CNS0095614	Golden flower (tetraploid) 2	349.344
	CNS0095615	Golden flower (tetraploid) 3	430.950
CRA001975	CRR073297	Stem 1	246.839
	CRR073298	Stem 2	250.246
	CRR073299	Stem 3	284.475
	CRR073300	Leaf 1	289.942
	CRR073301	Leaf 2	313.923
	CRR073302	Leaf 3	323.201
	CRR073303	Juvenile bud 1	363.986
	CRR073304	Juvenile bud 2	355.773
	CRR073305	Juvenile bud 3	352.909
	CRR073306	Third green 1	287.698
	CRR073307	Third green 2	270.919
	CRR073308	Third green 3	249.527
	CRR073309	Second white 1	317.584
	CRR073310	Second white 2	213.443
	CRR073311	Second white 3	189.781
	CRR073312	Silver flowering 1	232.156
	CRR073313	Silver flowering 2	245.858
	CRR073314	Silver flowering 3	200.304
	CRR073315	Gold flowering 1	151.671
	CRR073316	Gold flowering 2	172.885
	CRR073317	Gold flowering 3	161.160
	CRR073318	Tawny withering 1	284.445
	CRR073319	Tawny withering 2	262.570
	CRR073320	Tawny withering 3	271.683