Detail information of GWHGAAZE013698


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI27579.30unnamed protein product [Vitis vinifera]
Swissprottr|Q38953|DHX8_ARATH4E-177Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|V4VFQ1|V4VFQ1_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR51329.1}
TAIR10AT1G27900.10RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106546778106554326-
GWHAAZE00000003mRNA106546778106554326-
GWHAAZE00000003exon106546778106546931-
GWHAAZE00000003exon106547025106547200-
GWHAAZE00000003exon106547451106547611-
GWHAAZE00000003exon106548288106548357-
GWHAAZE00000003exon106548570106548717-
GWHAAZE00000003exon106549318106549441-
GWHAAZE00000003exon106549711106549803-
GWHAAZE00000003exon106549915106550129-
GWHAAZE00000003exon106551231106551317-
GWHAAZE00000003exon106551610106551701-
GWHAAZE00000003exon106552271106552277-
GWHAAZE00000003exon106552384106552520-
GWHAAZE00000003exon106552610106552662-
GWHAAZE00000003exon106552879106553096-
GWHAAZE00000003exon106553245106553349-
GWHAAZE00000003exon106553456106553548-
GWHAAZE00000003exon106554127106554326-
GWHAAZE00000003CDS106554127106554326-
GWHAAZE00000003CDS106553456106553548-
GWHAAZE00000003CDS106553245106553349-
GWHAAZE00000003CDS106552879106553096-
GWHAAZE00000003CDS106552610106552662-
GWHAAZE00000003CDS106552384106552520-
GWHAAZE00000003CDS106552271106552277-
GWHAAZE00000003CDS106551610106551701-
GWHAAZE00000003CDS106551231106551317-
GWHAAZE00000003CDS106549915106550129-
GWHAAZE00000003CDS106549711106549803-
GWHAAZE00000003CDS106549318106549441-
GWHAAZE00000003CDS106548570106548717-
GWHAAZE00000003CDS106548288106548357-
GWHAAZE00000003CDS106547451106547611-
GWHAAZE00000003CDS106547025106547200-
GWHAAZE00000003CDS106546778106546931-
Transcript Sequence

Network for GWHGAAZE013698

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD131675.00E-08
PF00271.32Helicase_C2083415.70E-10
PF04408.24HA24094849.70E-19
PF07717.17OB_NTP_bind5686488.40E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12818DHX8, PRP22 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0004386molecular_functionhelicase activity
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.113
SRR3591706second leaf10.542
SRR3591707mature leaf9.786
SRR3591708Shoot apex19.517
SRR3591709Stem14.347
SRR3591710White floral bud14.805
SRR3591711White flower14.260
SRR3591712Green floral bud13.804
SRR3591713Yellow flower12.564
SRP173429 SRR8316895Juvenile bud stage 15.712
SRR8316896Juvenile bud stage 20.104
SRR8316897Juvenile bud stage 8.791
SRR8316894Third green stage 7.859
SRR8316900Third green stage 19.085
SRR8316901Third green stage 17.410
SRR8316898Complete white stage 8.382
SRR8316899Complete white stage 26.058
SRR8316903Complete white stage 16.757
SRR8316902Silver flowering stage8.159
SRR8316904Silver flowering stage14.898
SRR8316905Silver flowering stage6.792
SRR8316906Gold flowering stage 19.117
SRR8316907Gold flowering stage 19.238
SRR8316908Gold flowering stage 18.073
SRP132670SRR6706286Control11.941
SRR6706287Light intensity 50%14.074
SRR6706288Light intensity 20%13.950
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.481
CNS0095593Slightly white alabastrum(diploid) 210.835
CNS0095594Slightly white alabastrum(diploid) 39.658
CNS0095595Whole white alabastrum(diploid) 211.117
CNS0095596Whole white alabastrum(diploid) 38.305
CNS0095597Whole white alabastrum(diploid) 49.677
CNS0095598Silvery flower (diploied) 115.947
CNS0095599Silvery flower (diploied) 216.134
CNS0095600Silvery flower (diploied) 311.833
CNS0095601Golden flower (diploid) 115.313
CNS0095602Golden flower (diploid) 214.114
CNS0095603Golden flower (diploid) 313.578
CNS0095604Slightly white alabastrum(tetraploid) 19.959
CNS0095605Slightly white alabastrum(tetraploid) 28.843
CNS0095606Slightly white alabastrum(tetraploid) 316.523
CNS0095607Whole white alabastrum(tetraploid) 15.962
CNS0095608Whole white alabastrum(tetraploid) 24.111
CNS0095609Whole white alabastrum(tetraploid) 310.135
CNS0095610Silvery flower (tetraploid) 114.062
CNS0095611Silvery flower (tetraploid) 214.211
CNS0095612Silvery flower (tetraploid) 313.740
CNS0095613Golden flower (tetraploid) 17.931
CNS0095614Golden flower (tetraploid) 210.369
CNS0095615Golden flower (tetraploid) 39.098
CRA001975CRR073297Stem 121.550
CRR073298Stem 221.216
CRR073299Stem 38.865
CRR073300Leaf 122.135
CRR073301Leaf 218.653
CRR073302Leaf 38.699
CRR073303Juvenile bud 19.009
CRR073304Juvenile bud 26.328
CRR073305Juvenile bud 310.485
CRR073306Third green 13.111
CRR073307Third green 21.782
CRR073308Third green 33.053
CRR073309Second white 13.491
CRR073310Second white 25.350
CRR073311Second white 33.532
CRR073312Silver flowering 12.458
CRR073313Silver flowering 22.870
CRR073314Silver flowering 33.545
CRR073315Gold flowering 16.038
CRR073316Gold flowering 210.862
CRR073317Gold flowering 35.635
CRR073318Tawny withering 111.852
CRR073319Tawny withering 210.830
CRR073320Tawny withering 39.179