Gene detail

Detail information of GWHGAAZE013690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010259376.1	0	PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Nelumbo nucifera]
Swissprot	tr\|P52424\|PUR5_VIGUN	0	Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A5BS32\|A5BS32_VITVI	0	Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256\|RuleBase:RU004370}
TAIR10	AT3G55010.2	7E-145	phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106434141	106437113	-
GWHAAZE00000003	mRNA	106434141	106437113	-
GWHAAZE00000003	exon	106434141	106434311	-
GWHAAZE00000003	exon	106434462	106434620	-
GWHAAZE00000003	exon	106434717	106434819	-
GWHAAZE00000003	exon	106434974	106435146	-
GWHAAZE00000003	exon	106435754	106435813	-
GWHAAZE00000003	exon	106435905	106436006	-
GWHAAZE00000003	exon	106436080	106436174	-
GWHAAZE00000003	exon	106436768	106437113	-
GWHAAZE00000003	CDS	106436768	106437113	-
GWHAAZE00000003	CDS	106436080	106436174	-
GWHAAZE00000003	CDS	106435905	106436006	-
GWHAAZE00000003	CDS	106435754	106435813	-
GWHAAZE00000003	CDS	106434974	106435146	-
GWHAAZE00000003	CDS	106434717	106434819	-
GWHAAZE00000003	CDS	106434462	106434620	-
GWHAAZE00000003	CDS	106434141	106434311	-

Transcript Sequence
>GWHTAAZE013704 ATGACCACAACGTTTGGAGGAAATATAGAGCTGTCGCGATGCTTAACAACATCAATTAGACCTTTCCAGAAATATTACTGCTCTCGCCAGTGCTTACGGATACCCTTACTTAGTTGCATCACAAAGAGGTATTTGCCATCATCAGTTGCTTCTGGTGATGTAAAATCTAGCGGATTTATTAAGGCTAGCACTGTATGCTCGGCGTTAGGCAGCAATCATGGTGAAGAGGCTGACAGTCTTACATACAAGGATGCTGGTGTTGACATAGATGCTGGATCTGAGCTTGTTAGGAGAATTGCAAAGATGGCACCTGGGATTGGAGGCTTCGGAGGGCTATTTCCTCTTGGGGATTCCTATCTCGTGGCTGGTACCGATGGCGTGGGAACTAAACTTAAGCTGGCATTTGAAACTGGGGTTCATGACACTATTGGCATTGATCTAGTTGCAATGAGTGTCAACGACATAATTACTTCTGGAGCAAAGCCTTTATTTTTCCTTGATTATTTTGCTACAAGCCACCTTGACGTTGATCTTGCTGAAAAGGTTATAAAAGGCATTGTTGATGGTTGCCAGCAATCTGATTGCGCTCTTTTAGGAGGAGAGACTGCAGAGATGCCAGGTTTCTATGCAGATGGGGAGTATGATCTTAGTGGGTTTGCGGTTGGTGTTGTCAAAAAAGATTCAGTTATCGATGGGAAAAATATCACAGTCGGGGATGTCCTCATTGGTTTGCCATCCAGTGGAGTTCATTCAAATGGCTTCTCTCTTGTCAGAAGGGTCCTGGCTCAAAGTGGCCTTTCTTTGCAAGACCACCTTCCTGGCGAATCCATTACATTGGGTGAAGCTTTGCTTGCGCCAACTGTTATATATGTTAAGCAGGTGCTCGACTTCATTAGTAAGGGAGGCGTCAAGGGGATAGCTCACATCACAGGTGGTGGATTTACGGATAATATACCCAGAGTGTTACCAAAAGGCCTTGGAGCTCTCATTTGCGAAGGCTCTTGGGTTGTTCCTCCTGTTTTCAAATGGATCCAAGAGGCTGGTAGGATAGAAGATGCTGAAATGAGTCGGACTTTCAATATGGGAATTGGGATGGTTCTAGTTGTTAGCAAGGAGGCAGCCGGTACAATACTTGGGGATGGACATGGATCAAATACAGCATACTGGATCGGTGAGGTTGTAAAAGGTGATGGAGTGAGATATCAATGA

Network for GWHGAAZE013690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00586.25	AIRS	117	224	3.80E-15
PF02769.23	AIRS_C	237	399	4.20E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01933	purM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0006189	biological_process	'de novo' IMP biosynthetic process
GO:0004641	molecular_function	phosphoribosylformylglycinamidine cyclo-ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.261
	SRR3591706	second leaf	24.098
	SRR3591707	mature leaf	23.616
	SRR3591708	Shoot apex	48.386
	SRR3591709	Stem	30.650
	SRR3591710	White floral bud	30.341
	SRR3591711	White flower	46.506
	SRR3591712	Green floral bud	43.055
	SRR3591713	Yellow flower	36.758
SRP173429	SRR8316895	Juvenile bud stage	29.859
	SRR8316896	Juvenile bud stage	34.862
	SRR8316897	Juvenile bud stage	18.712
	SRR8316894	Third green stage	13.625
	SRR8316900	Third green stage	48.047
	SRR8316901	Third green stage	41.139
	SRR8316898	Complete white stage	12.864
	SRR8316899	Complete white stage	41.176
	SRR8316903	Complete white stage	20.102
	SRR8316902	Silver flowering stage	17.965
	SRR8316904	Silver flowering stage	19.332
	SRR8316905	Silver flowering stage	9.441
	SRR8316906	Gold flowering stage	30.780
	SRR8316907	Gold flowering stage	37.572
	SRR8316908	Gold flowering stage	48.040
SRP132670	SRR6706286	Control	28.922
	SRR6706287	Light intensity 50%	33.716
	SRR6706288	Light intensity 20%	36.964
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.642
	CNS0095593	Slightly white alabastrum(diploid) 2	34.969
	CNS0095594	Slightly white alabastrum(diploid) 3	28.843
	CNS0095595	Whole white alabastrum(diploid) 2	29.713
	CNS0095596	Whole white alabastrum(diploid) 3	31.763
	CNS0095597	Whole white alabastrum(diploid) 4	21.761
	CNS0095598	Silvery flower (diploied) 1	31.078
	CNS0095599	Silvery flower (diploied) 2	26.768
	CNS0095600	Silvery flower (diploied) 3	37.275
	CNS0095601	Golden flower (diploid) 1	23.434
	CNS0095602	Golden flower (diploid) 2	28.547
	CNS0095603	Golden flower (diploid) 3	28.810
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.105
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.858
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.761
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.094
	CNS0095610	Silvery flower (tetraploid) 1	58.395
	CNS0095611	Silvery flower (tetraploid) 2	48.688
	CNS0095612	Silvery flower (tetraploid) 3	55.912
	CNS0095613	Golden flower (tetraploid) 1	31.846
	CNS0095614	Golden flower (tetraploid) 2	41.827
	CNS0095615	Golden flower (tetraploid) 3	21.612
CRA001975	CRR073297	Stem 1	38.645
	CRR073298	Stem 2	33.205
	CRR073299	Stem 3	39.087
	CRR073300	Leaf 1	40.608
	CRR073301	Leaf 2	39.633
	CRR073302	Leaf 3	48.871
	CRR073303	Juvenile bud 1	50.337
	CRR073304	Juvenile bud 2	42.966
	CRR073305	Juvenile bud 3	48.345
	CRR073306	Third green 1	18.115
	CRR073307	Third green 2	12.679
	CRR073308	Third green 3	17.991
	CRR073309	Second white 1	27.894
	CRR073310	Second white 2	18.139
	CRR073311	Second white 3	17.759
	CRR073312	Silver flowering 1	19.233
	CRR073313	Silver flowering 2	27.469
	CRR073314	Silver flowering 3	14.564
	CRR073315	Gold flowering 1	25.205
	CRR073316	Gold flowering 2	28.216
	CRR073317	Gold flowering 3	17.568
	CRR073318	Tawny withering 1	33.063
	CRR073319	Tawny withering 2	24.278
	CRR073320	Tawny withering 3	38.991