Gene detail

Detail information of GWHGAAZE013676

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP13266.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6K908\|ARP3_ORYSJ	Actin-related protein 3
trEMBL	tr\|A0A068UXZ3\|A0A068UXZ3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13266.1}
TAIR10	AT1G13180.1	Actin-like ATPase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106286597	106291254	+
GWHAAZE00000003	mRNA	106286597	106291254	+
GWHAAZE00000003	exon	106286597	106286712	+
GWHAAZE00000003	exon	106287425	106287893	+
GWHAAZE00000003	exon	106289057	106289203	+
GWHAAZE00000003	exon	106289421	106289513	+
GWHAAZE00000003	exon	106289729	106289848	+
GWHAAZE00000003	exon	106290680	106290790	+
GWHAAZE00000003	exon	106290951	106291076	+
GWHAAZE00000003	exon	106291150	106291254	+
GWHAAZE00000003	CDS	106286597	106286712	+
GWHAAZE00000003	CDS	106287425	106287893	+
GWHAAZE00000003	CDS	106289057	106289203	+
GWHAAZE00000003	CDS	106289421	106289513	+
GWHAAZE00000003	CDS	106289729	106289848	+
GWHAAZE00000003	CDS	106290680	106290790	+
GWHAAZE00000003	CDS	106290951	106291076	+
GWHAAZE00000003	CDS	106291150	106291254	+

Transcript Sequence
>GWHTAAZE013690 ATGACCGCGGATCGGAATCGGATGCTGACAAATTTTGAAGAGGGGAGGGGTGCACTGGACTGCCGCAGTACCAGAGCCGAGCCACAACATCAGGGTAACGCACGCAGATATGAACGGTATACTAAAATGGGATTTGCCGGTAACGTGGAGCCGTGTTTCACCGTTCCCACAGTAGTTGCCGTAAACGAGTCGTTCGTAAACCAATCACGAGGAGGTTCATTGAAAGGAAGTAATTGGCTAGCACAACACAGTGCGGGGGTTATGGCGGATCTGGATTTCTTTATTGGGGACGAAGCTATGTCTAGATCTCGATCTAATAATAATACGTATAATCTTAGTCATCCTATCAGGCAGGGACAGGTTGATAATTGGGATTCAATGGAAAGGTTTTGGCAGCAGTGTATATTCAATTACTTACGCTGTGATCCAGAGGATCATTATTTTCTGTTGACGGAGAGTCCTCTTACTGCCCCGGAGAGTCGCGAGTATACCGGCGAGATTATGTTTGAGACTTTCAATGTTCCTGGACTTTATATTGCTGTACAGCCGGTGCTTGCTCTCGCAGCAGGTTACACCACTTCTAAGTGTGAGATGACAGGGGTTGTAGTAGATGTTGGAGATGGGGCTACTCATGTTGTACCTGTTGCAGATGGTTATGTTATTGGGAGCAGCATAAAGTCCATTCCGATCGCTGGAAAGGATGTTACTCTCTTCATCCAACAACTCATGCGGGAGAGAGGAGAGCACATTCCACCAGAAGATTCCCTTGAAATCGCTCGGAAAGTCAAGGAAATGTATTGCTACACTTGTTCTGATATTGTCAAGGAGTTTAATAAGCATGACAAAGAGCCATCAAAGTATGTCAAGCAGTGGAGAGGTATTAAACCGAAGACTGGGGCACCATATTCTTGTGATATCGGCTATGAACGATTTCTTGGCCCTGAGGTTTTCTTCAATCCTGAGATATACAGTAGTGATTTTACAACTCCTTTACCTGCTGTAATAGACAAGTGTATTCAGTCAGCACCGATTGACACGAGAAGGGCCCTCTATAAGAATATAGTGTTGTCTGGAGGTTCAACCATGTTCAAAGACTTCCACCGAAGGTTGCAACGGGATGTAAAGAAGATAGTGGATGCTCGGGTTTTAGCATCTGATGCTAGGCTTGGCGGTGAAGTAAAAGCACAACCAGTGGAAGTCAATGTAGTCAGCCATCCCATTCAAAGATATGCGGTTTGGTTTGGAGGCTCTGTACTTGCTTCAACACCCGAATTTTTTGCGGTTTGA

Network for GWHGAAZE013676

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00022.20	Actin	39	425	1.50E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18584	ACTR3, ARP3	Autophagy - yeast	map04138
K18584	ACTR3, ARP3	Tight junction	map04530

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.052
	SRR3591706	second leaf	31.598
	SRR3591707	mature leaf	34.210
	SRR3591708	Shoot apex	23.230
	SRR3591709	Stem	45.830
	SRR3591710	White floral bud	44.915
	SRR3591711	White flower	42.719
	SRR3591712	Green floral bud	38.489
	SRR3591713	Yellow flower	35.407
SRP173429	SRR8316895	Juvenile bud stage	18.221
	SRR8316896	Juvenile bud stage	22.306
	SRR8316897	Juvenile bud stage	11.256
	SRR8316894	Third green stage	11.727
	SRR8316900	Third green stage	33.095
	SRR8316901	Third green stage	35.422
	SRR8316898	Complete white stage	20.160
	SRR8316899	Complete white stage	48.208
	SRR8316903	Complete white stage	33.054
	SRR8316902	Silver flowering stage	17.959
	SRR8316904	Silver flowering stage	27.698
	SRR8316905	Silver flowering stage	10.726
	SRR8316906	Gold flowering stage	38.803
	SRR8316907	Gold flowering stage	43.111
	SRR8316908	Gold flowering stage	47.498
SRP132670	SRR6706286	Control	31.390
	SRR6706287	Light intensity 50%	36.054
	SRR6706288	Light intensity 20%	35.992
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.700
	CNS0095593	Slightly white alabastrum(diploid) 2	17.329
	CNS0095594	Slightly white alabastrum(diploid) 3	12.636
	CNS0095595	Whole white alabastrum(diploid) 2	18.064
	CNS0095596	Whole white alabastrum(diploid) 3	17.562
	CNS0095597	Whole white alabastrum(diploid) 4	20.248
	CNS0095598	Silvery flower (diploied) 1	26.872
	CNS0095599	Silvery flower (diploied) 2	14.961
	CNS0095600	Silvery flower (diploied) 3	41.216
	CNS0095601	Golden flower (diploid) 1	16.566
	CNS0095602	Golden flower (diploid) 2	36.636
	CNS0095603	Golden flower (diploid) 3	33.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.970
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.363
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.447
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.003
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.977
	CNS0095610	Silvery flower (tetraploid) 1	40.328
	CNS0095611	Silvery flower (tetraploid) 2	36.508
	CNS0095612	Silvery flower (tetraploid) 3	48.960
	CNS0095613	Golden flower (tetraploid) 1	25.813
	CNS0095614	Golden flower (tetraploid) 2	41.270
	CNS0095615	Golden flower (tetraploid) 3	38.104
CRA001975	CRR073297	Stem 1	22.182
	CRR073298	Stem 2	20.470
	CRR073299	Stem 3	16.101
	CRR073300	Leaf 1	23.874
	CRR073301	Leaf 2	22.351
	CRR073302	Leaf 3	17.143
	CRR073303	Juvenile bud 1	21.195
	CRR073304	Juvenile bud 2	20.767
	CRR073305	Juvenile bud 3	22.166
	CRR073306	Third green 1	21.379
	CRR073307	Third green 2	15.821
	CRR073308	Third green 3	19.681
	CRR073309	Second white 1	15.946
	CRR073310	Second white 2	22.873
	CRR073311	Second white 3	22.206
	CRR073312	Silver flowering 1	15.721
	CRR073313	Silver flowering 2	13.954
	CRR073314	Silver flowering 3	14.690
	CRR073315	Gold flowering 1	16.450
	CRR073316	Gold flowering 2	23.984
	CRR073317	Gold flowering 3	17.918
	CRR073318	Tawny withering 1	24.781
	CRR073319	Tawny withering 2	21.263
	CRR073320	Tawny withering 3	25.471