Detail information of GWHGAAZE013670


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN81180.10hypothetical protein VITISV_012787 [Vitis vinifera]
Swissprottr|Q6YUU5|MDR_ORYSJ0Putative multidrug resistance protein
trEMBLtr|A5BIJ5|A5BIJ5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN81180.1}
TAIR10AT3G28345.10ABC transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106229834106234525-
GWHAAZE00000003mRNA106229834106234525-
GWHAAZE00000003exon106229834106230209-
GWHAAZE00000003exon106230308106232250-
GWHAAZE00000003exon106232343106232883-
GWHAAZE00000003exon106232994106233450-
GWHAAZE00000003exon106233506106233724-
GWHAAZE00000003exon106234074106234117-
GWHAAZE00000003exon106234305106234525-
GWHAAZE00000003CDS106234305106234525-
GWHAAZE00000003CDS106234074106234117-
GWHAAZE00000003CDS106233506106233724-
GWHAAZE00000003CDS106232994106233450-
GWHAAZE00000003CDS106232343106232883-
GWHAAZE00000003CDS106230308106232250-
GWHAAZE00000003CDS106229834106230209-
Transcript Sequence

Network for GWHGAAZE013670

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0054map04976 Bile secretion
map02010 ABC transporters
GO:0042626 ATPase-coupled transmembrane transporter activity GOslim:molecular_function
GO:0016887 ATPase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.24ABC_membrane191531.50E-16
PF00664.24ABC_membrane2343010.00011
PF00005.28ABC_tran3815304.80E-32
PF00664.24ABC_membrane6989682.30E-46
PF00005.28ABC_tran103911871.60E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05658ABCB1, CD243 ABC transporters map02010
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0016021cellular_componentintegral component of membrane
GO:0005524molecular_functionATP binding
GO:0042626molecular_functionATPase-coupled transmembrane transporter activity
GO:0016887molecular_functionATPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.885
SRR3591706second leaf1.078
SRR3591707mature leaf1.261
SRR3591708Shoot apex1.324
SRR3591709Stem2.169
SRR3591710White floral bud0.566
SRR3591711White flower0.741
SRR3591712Green floral bud0.832
SRR3591713Yellow flower0.466
SRP173429 SRR8316895Juvenile bud stage 1.814
SRR8316896Juvenile bud stage 2.409
SRR8316897Juvenile bud stage 1.013
SRR8316894Third green stage 1.734
SRR8316900Third green stage 2.760
SRR8316901Third green stage 2.191
SRR8316898Complete white stage 0.539
SRR8316899Complete white stage 1.744
SRR8316903Complete white stage 1.507
SRR8316902Silver flowering stage0.466
SRR8316904Silver flowering stage0.866
SRR8316905Silver flowering stage0.240
SRR8316906Gold flowering stage 0.791
SRR8316907Gold flowering stage 0.718
SRR8316908Gold flowering stage 0.703
SRP132670SRR6706286Control1.973
SRR6706287Light intensity 50%2.396
SRR6706288Light intensity 20%2.780
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.910
CNS0095593Slightly white alabastrum(diploid) 20.509
CNS0095594Slightly white alabastrum(diploid) 30.569
CNS0095595Whole white alabastrum(diploid) 20.721
CNS0095596Whole white alabastrum(diploid) 30.455
CNS0095597Whole white alabastrum(diploid) 40.403
CNS0095598Silvery flower (diploied) 11.261
CNS0095599Silvery flower (diploied) 20.971
CNS0095600Silvery flower (diploied) 31.456
CNS0095601Golden flower (diploid) 11.046
CNS0095602Golden flower (diploid) 21.368
CNS0095603Golden flower (diploid) 31.629
CNS0095604Slightly white alabastrum(tetraploid) 10.593
CNS0095605Slightly white alabastrum(tetraploid) 20.408
CNS0095606Slightly white alabastrum(tetraploid) 31.602
CNS0095607Whole white alabastrum(tetraploid) 10.348
CNS0095608Whole white alabastrum(tetraploid) 20.021
CNS0095609Whole white alabastrum(tetraploid) 30.705
CNS0095610Silvery flower (tetraploid) 10.549
CNS0095611Silvery flower (tetraploid) 21.164
CNS0095612Silvery flower (tetraploid) 30.336
CNS0095613Golden flower (tetraploid) 10.253
CNS0095614Golden flower (tetraploid) 20.449
CNS0095615Golden flower (tetraploid) 30.360
CRA001975CRR073297Stem 12.771
CRR073298Stem 22.366
CRR073299Stem 30.211
CRR073300Leaf 12.214
CRR073301Leaf 22.176
CRR073302Leaf 30.123
CRR073303Juvenile bud 10.217
CRR073304Juvenile bud 20.128
CRR073305Juvenile bud 30.582
CRR073306Third green 10.011
CRR073307Third green 20.021
CRR073308Third green 30.012
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.003
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.139
CRR073316Gold flowering 20.506
CRR073317Gold flowering 30.053
CRR073318Tawny withering 10.281
CRR073319Tawny withering 20.711
CRR073320Tawny withering 30.216