Detail information of GWHGAAZE013662


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13250.10unnamed protein product [Coffea canephora]
Swissprottr|P51567|AFC2_ARATH0Serine/threonine-protein kinase AFC2
trEMBLtr|A0A068UXL3|A0A068UXL3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313|EMBL:CDP13250.1}
TAIR10AT4G24740.14E-178FUS3-complementing gene 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene106096169106101745-
GWHAAZE00000003mRNA106096169106101745-
GWHAAZE00000003exon106101346106101745-
GWHAAZE00000003exon106099173106099349-
GWHAAZE00000003exon106098213106098239-
GWHAAZE00000003exon106097981106098134-
GWHAAZE00000003exon106097793106097841-
GWHAAZE00000003exon106097583106097697-
GWHAAZE00000003exon106097260106097390-
GWHAAZE00000003exon106096960106097116-
GWHAAZE00000003exon106096819106096883-
GWHAAZE00000003exon106096642106096739-
GWHAAZE00000003exon106096428106096530-
GWHAAZE00000003exon106096169106096318-
GWHAAZE00000003CDS106101346106101745-
GWHAAZE00000003CDS106099173106099349-
GWHAAZE00000003CDS106098213106098239-
GWHAAZE00000003CDS106097981106098134-
GWHAAZE00000003CDS106097793106097841-
GWHAAZE00000003CDS106097583106097697-
GWHAAZE00000003CDS106097260106097390-
GWHAAZE00000003CDS106096960106097116-
GWHAAZE00000003CDS106096819106096883-
GWHAAZE00000003CDS106096642106096739-
GWHAAZE00000003CDS106096428106096530-
GWHAAZE00000003CDS106096169106096318-
Transcript Sequence

Network for GWHGAAZE013662

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1935332.80E-43
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CLK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.429
SRR3591706second leaf15.793
SRR3591707mature leaf22.075
SRR3591708Shoot apex20.994
SRR3591709Stem38.496
SRR3591710White floral bud29.534
SRR3591711White flower29.018
SRR3591712Green floral bud25.915
SRR3591713Yellow flower35.439
SRP173429 SRR8316895Juvenile bud stage 12.161
SRR8316896Juvenile bud stage 16.236
SRR8316897Juvenile bud stage 9.590
SRR8316894Third green stage 9.939
SRR8316900Third green stage 25.227
SRR8316901Third green stage 20.484
SRR8316898Complete white stage 12.880
SRR8316899Complete white stage 36.170
SRR8316903Complete white stage 20.948
SRR8316902Silver flowering stage14.119
SRR8316904Silver flowering stage19.459
SRR8316905Silver flowering stage8.293
SRR8316906Gold flowering stage 30.485
SRR8316907Gold flowering stage 29.419
SRR8316908Gold flowering stage 33.608
SRP132670SRR6706286Control14.487
SRR6706287Light intensity 50%14.460
SRR6706288Light intensity 20%15.095
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.073
CNS0095593Slightly white alabastrum(diploid) 222.047
CNS0095594Slightly white alabastrum(diploid) 317.847
CNS0095595Whole white alabastrum(diploid) 220.252
CNS0095596Whole white alabastrum(diploid) 322.732
CNS0095597Whole white alabastrum(diploid) 420.780
CNS0095598Silvery flower (diploied) 118.910
CNS0095599Silvery flower (diploied) 214.578
CNS0095600Silvery flower (diploied) 322.782
CNS0095601Golden flower (diploid) 117.750
CNS0095602Golden flower (diploid) 223.084
CNS0095603Golden flower (diploid) 322.051
CNS0095604Slightly white alabastrum(tetraploid) 119.623
CNS0095605Slightly white alabastrum(tetraploid) 218.208
CNS0095606Slightly white alabastrum(tetraploid) 325.294
CNS0095607Whole white alabastrum(tetraploid) 118.734
CNS0095608Whole white alabastrum(tetraploid) 219.221
CNS0095609Whole white alabastrum(tetraploid) 322.951
CNS0095610Silvery flower (tetraploid) 125.180
CNS0095611Silvery flower (tetraploid) 223.662
CNS0095612Silvery flower (tetraploid) 328.565
CNS0095613Golden flower (tetraploid) 125.012
CNS0095614Golden flower (tetraploid) 225.942
CNS0095615Golden flower (tetraploid) 332.381
CRA001975CRR073297Stem 111.226
CRR073298Stem 210.333
CRR073299Stem 36.769
CRR073300Leaf 113.859
CRR073301Leaf 213.668
CRR073302Leaf 37.174
CRR073303Juvenile bud 19.549
CRR073304Juvenile bud 27.270
CRR073305Juvenile bud 310.430
CRR073306Third green 17.851
CRR073307Third green 26.331
CRR073308Third green 36.250
CRR073309Second white 110.426
CRR073310Second white 29.477
CRR073311Second white 38.430
CRR073312Silver flowering 111.154
CRR073313Silver flowering 29.479
CRR073314Silver flowering 37.979
CRR073315Gold flowering 13.861
CRR073316Gold flowering 25.654
CRR073317Gold flowering 33.460
CRR073318Tawny withering 19.233
CRR073319Tawny withering 211.640
CRR073320Tawny withering 38.185