Gene detail

Detail information of GWHGAAZE013642

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006438293.1	hypothetical protein CICLE_v10030794mg [Citrus clementina]
Swissprot	tr\|Q8RY46\|AB26B_ARATH	ABC transporter B family member 26, chloroplastic (Precursor)
trEMBL	tr\|F6GZ17\|F6GZ17_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45203.1}
TAIR10	AT1G70610.1	transporter associated with antigen processing protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105837554	105844551	+
GWHAAZE00000003	mRNA	105837554	105844551	+
GWHAAZE00000003	exon	105837554	105837928	+
GWHAAZE00000003	exon	105838413	105838540	+
GWHAAZE00000003	exon	105838738	105838780	+
GWHAAZE00000003	exon	105839070	105839114	+
GWHAAZE00000003	exon	105839241	105839363	+
GWHAAZE00000003	exon	105839452	105839555	+
GWHAAZE00000003	exon	105839677	105839731	+
GWHAAZE00000003	exon	105840406	105840476	+
GWHAAZE00000003	exon	105840817	105840919	+
GWHAAZE00000003	exon	105841261	105841564	+
GWHAAZE00000003	exon	105842499	105842572	+
GWHAAZE00000003	exon	105842822	105842878	+
GWHAAZE00000003	exon	105842967	105843041	+
GWHAAZE00000003	exon	105843140	105843214	+
GWHAAZE00000003	exon	105843301	105843582	+
GWHAAZE00000003	exon	105843663	105843788	+
GWHAAZE00000003	exon	105844087	105844551	+
GWHAAZE00000003	CDS	105837554	105837928	+
GWHAAZE00000003	CDS	105838413	105838540	+
GWHAAZE00000003	CDS	105838738	105838780	+
GWHAAZE00000003	CDS	105839070	105839114	+
GWHAAZE00000003	CDS	105839241	105839363	+
GWHAAZE00000003	CDS	105839452	105839555	+
GWHAAZE00000003	CDS	105839677	105839731	+
GWHAAZE00000003	CDS	105840406	105840476	+
GWHAAZE00000003	CDS	105840817	105840919	+
GWHAAZE00000003	CDS	105841261	105841564	+
GWHAAZE00000003	CDS	105842499	105842572	+
GWHAAZE00000003	CDS	105842822	105842878	+
GWHAAZE00000003	CDS	105842967	105843041	+
GWHAAZE00000003	CDS	105843140	105843214	+
GWHAAZE00000003	CDS	105843301	105843582	+
GWHAAZE00000003	CDS	105843663	105843788	+
GWHAAZE00000003	CDS	105844087	105844167	+
GWHAAZE00000003	three_prime_UTR	105844168	105844551	+

Transcript Sequence
>GWHTAAZE013656 CATCCCTTCACCAAAGTTCATCCCAAAACTCCCACTTTTACTAACCGAACAAGAAAATGCCTTCATTTATCTTCCCCTAACGTCCGATTTTGTAACAAATTTGCTTCAGTAAATGGATATTCAGTCCACCAAAGCACAAAAGAGGATTACGGACATAATAACAATGTTGAATTTCCCGAGAGGATGCGAAGATTTATTGATATTATTAGGTCACTATTGCCCGGTGGAAGTTGGTGGAGCTTCCCCGAGGAAGTTGATGTTGCCCTAATTGCAAAGCCGATTACTGTTTTGAGGGCGCTTCAGCGAATGTGGGAGCTGATAGCTGTAGATAGATGGATTATTTATGTTGCCTTTTCGGCCCTAATTATGTCCGCGCTTTCACAGATTGCAATTCCACATTTCCTGACGGCCTCAATCTTTTCTGCACAAAGTGGTGAAATTGCGGTGTTCCACAGGAATGTCCGGCTCTTGATTATGTTATGCTTTGCTTCAGGAATAAGCAGTGGTCTACGAGGTTGCTGTTTTGGCATTGCAAATATGATTCTTGTTAAGCGAATGCGGGAAACATTATTCTCCACTCTTCTTCTTCAGGACGTATCCTTTTTCGACAATGAAACCGTTGGTGATTTAACAAGTAGGCTCGGAGCAGATTGCCAGCAAGTTTCGCGTGTCATTGGAAATGATCTCAATATTATACTGCGTTACACTCTTCAGGGCACAGGTGCTTTAATATACTTGTTGGTTTTGTCATGGCCACTTGGATTATGTACATTGGCAATATGCTCTGCTTTGGTAACCGTCCTGCTGTTATATGGCCAGTTCCAGAAGAAAGCGGCAAAGTTAACTCAAGAGTTTACTGCTTCTGCCAATGAAGTTGCACAAGAGACTTTCTCTCTGATGAGAACTGTTCGAGTGTACGGGTCAGAGCAACAAGAAATTGGAAGGTACAAGCTGTGGTTGGATAACTTAGCTGATATAAGTTTACGACAAAGTGCTGCCTATGGATTTTGGAACCTCAGTTTCAACACTCTCTATCACTCAACACAGATTATTGCTGCGTTGGTTGGAGGAATGTCCATTTTGGCTGGTCATATTACAGCAGAGCAACTTACAAAGTTCATATTGTACAGTGAATGGCTGATCTATGCAACATGGTTTGTTGGGGACAATTTGGCATCATTAATGCAATCTGTTGGGGCTAGTGAAAAAGTTTTCCAGCTGATGGATCTTTTGCCTAGTGCCCAGTTCACGGTCAAAGGCAAGCGGTTTTTGAACTTTTCTGATAAATTAAAGCTCTATATGACTGTATCCCTTGTTGATTTGAATTATTTAGAGTCATGTTTCATCCTAGGTTTGAAGCCGCAAAGATTGAAAGGACGTGTTGAGTTTGTGGATGTTTCTTTCAATTATGCTTCAAGGCAAATGGTACTTGTTTTACAACATATAAGCATTTTGGTGCATCCTCACGAAGTTGTTGCACTTGTTGGTCTAAGTGGTAGTGGAAAAAGCACTCTGGTGAATCTTCTGCTCCGTTTATATGAGCCAACAAGCGGTCAGATTTTAATTGATGGCCACTCTCTTAACGATTTGGATGTCAAGTGGTTGAGAGAGAGAATTGGATACGTGGGACAGGAACCCCGACTGTTCCGCATGGATATCAGTTCAAACATAAGATACGGATGTACGAGAGATGTTAAGCAGGAGGATGTGGAGTGGGCTGCCAGGCAAGCATACGCTCACGACTTCATCTCATCTCTGCCGAATGGTTACCAAACACTTGTCGATGATGACCTACTAAGTGGAGGTCAAAAGCAGCGAATTGCAATAGCAAGAGCCCTTCTTAGGGACCCAGATATATTGATACTTGATGAAGCCACTAGTGCTCTTGATGCAGAGAGCGAACACAACGTCAAGGGTGTTCTTCGTGCTGTCAGAGGTGACCTCAAGTCGAAGAGAACTGTTATTGTAATTGCACACCGGCTTTCTACAATACAGGCTGCTGATAGAATAGTGGTGATGGATCGTGGTCGAATTGTTGAGGTGGGCAGCCACAAGGAGCTACTCTTGAAAGATGGCATGTATGCACGACTGAACAGAAGACAGGCGGATGCTATGGCATGATGTTGGAGCTAACTGATGCATAATATGATGTCTTACTCATTCTTCATTTGCATACACTTACAATCAGATTCAGATGATTAAAGAGGTTGGAAGGTTCTTTTATTTACTATCTCAACCTCTTGGAAATGATTAACGCAGCAGCCTACATAATTTTTTCTGCTGCCTCAATTTGCCCCCTTCTCAATTAATTAACGTCCGTCATTAAAGGCCAAACACCCATGTTGTATCTTATAAAATAATGAGCTGTATATTGGTTTACATTTTATATTGTTATGGGTTGTAGCAGTATTGAATCATGTCTTGCGATGTATGCTTATGACTTCTGTTTGATGAATATTAGGTGCAATATCATCAATTCGCTTTTATATGAAATGGATTTTACTA

Network for GWHGAAZE013642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	118	381	3.20E-37
PF00005.28	ABC_tran	479	627	6.20E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05656	ABCB9, TAPL	ABC transporters	map02010
K05656	ABCB9, TAPL	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.871
	SRR3591706	second leaf	25.411
	SRR3591707	mature leaf	28.920
	SRR3591708	Shoot apex	14.460
	SRR3591709	Stem	20.022
	SRR3591710	White floral bud	14.575
	SRR3591711	White flower	22.101
	SRR3591712	Green floral bud	12.412
	SRR3591713	Yellow flower	18.761
SRP173429	SRR8316895	Juvenile bud stage	9.548
	SRR8316896	Juvenile bud stage	12.556
	SRR8316897	Juvenile bud stage	11.329
	SRR8316894	Third green stage	5.956
	SRR8316900	Third green stage	15.739
	SRR8316901	Third green stage	14.818
	SRR8316898	Complete white stage	3.871
	SRR8316899	Complete white stage	14.383
	SRR8316903	Complete white stage	6.501
	SRR8316902	Silver flowering stage	5.339
	SRR8316904	Silver flowering stage	7.375
	SRR8316905	Silver flowering stage	3.027
	SRR8316906	Gold flowering stage	9.346
	SRR8316907	Gold flowering stage	8.886
	SRR8316908	Gold flowering stage	12.405
SRP132670	SRR6706286	Control	9.795
	SRR6706287	Light intensity 50%	10.511
	SRR6706288	Light intensity 20%	11.751
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.000
	CNS0095593	Slightly white alabastrum(diploid) 2	7.070
	CNS0095594	Slightly white alabastrum(diploid) 3	6.695
	CNS0095595	Whole white alabastrum(diploid) 2	6.207
	CNS0095596	Whole white alabastrum(diploid) 3	5.761
	CNS0095597	Whole white alabastrum(diploid) 4	5.641
	CNS0095598	Silvery flower (diploied) 1	9.940
	CNS0095599	Silvery flower (diploied) 2	9.133
	CNS0095600	Silvery flower (diploied) 3	11.660
	CNS0095601	Golden flower (diploid) 1	7.881
	CNS0095602	Golden flower (diploid) 2	9.822
	CNS0095603	Golden flower (diploid) 3	9.492
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.325
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.242
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.145
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.233
	CNS0095610	Silvery flower (tetraploid) 1	14.064
	CNS0095611	Silvery flower (tetraploid) 2	13.283
	CNS0095612	Silvery flower (tetraploid) 3	9.407
	CNS0095613	Golden flower (tetraploid) 1	6.603
	CNS0095614	Golden flower (tetraploid) 2	12.276
	CNS0095615	Golden flower (tetraploid) 3	7.534
CRA001975	CRR073297	Stem 1	10.703
	CRR073298	Stem 2	9.755
	CRR073299	Stem 3	8.470
	CRR073300	Leaf 1	11.018
	CRR073301	Leaf 2	10.975
	CRR073302	Leaf 3	9.037
	CRR073303	Juvenile bud 1	11.400
	CRR073304	Juvenile bud 2	8.781
	CRR073305	Juvenile bud 3	8.658
	CRR073306	Third green 1	3.801
	CRR073307	Third green 2	2.516
	CRR073308	Third green 3	3.178
	CRR073309	Second white 1	4.463
	CRR073310	Second white 2	4.692
	CRR073311	Second white 3	3.633
	CRR073312	Silver flowering 1	2.296
	CRR073313	Silver flowering 2	2.986
	CRR073314	Silver flowering 3	3.146
	CRR073315	Gold flowering 1	10.375
	CRR073316	Gold flowering 2	14.928
	CRR073317	Gold flowering 3	8.555
	CRR073318	Tawny withering 1	6.506
	CRR073319	Tawny withering 2	8.110
	CRR073320	Tawny withering 3	5.319