Gene detail

Detail information of GWHGAAZE013627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007044708.1	0	Nsp-interacting kinase 3 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q93ZS4\|NIK3_ARATH	2E-175	Protein NSP-INTERACTING KINASE 3 (Precursor)
trEMBL	tr\|A0A061E698\|A0A061E698_THECC	0	Nsp-interacting kinase 3 isoform 1 {ECO:0000313\|EMBL:EOY00540.1}
TAIR10	AT1G60800.1	7E-139	NSP-interacting kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105477788	105481598	+
GWHAAZE00000003	mRNA	105477788	105481598	+
GWHAAZE00000003	exon	105477788	105477881	+
GWHAAZE00000003	exon	105478040	105478172	+
GWHAAZE00000003	exon	105478296	105478367	+
GWHAAZE00000003	exon	105478663	105478806	+
GWHAAZE00000003	exon	105478938	105479009	+
GWHAAZE00000003	exon	105479144	105479203	+
GWHAAZE00000003	exon	105479304	105479401	+
GWHAAZE00000003	exon	105479503	105479649	+
GWHAAZE00000003	exon	105479962	105480303	+
GWHAAZE00000003	exon	105480727	105480896	+
GWHAAZE00000003	exon	105481278	105481598	+
GWHAAZE00000003	CDS	105477788	105477881	+
GWHAAZE00000003	CDS	105478040	105478172	+
GWHAAZE00000003	CDS	105478296	105478367	+
GWHAAZE00000003	CDS	105478663	105478806	+
GWHAAZE00000003	CDS	105478938	105479009	+
GWHAAZE00000003	CDS	105479144	105479203	+
GWHAAZE00000003	CDS	105479304	105479401	+
GWHAAZE00000003	CDS	105479503	105479649	+
GWHAAZE00000003	CDS	105479962	105480303	+
GWHAAZE00000003	CDS	105480727	105480896	+
GWHAAZE00000003	CDS	105481278	105481598	+

Transcript Sequence
>GWHTAAZE013641 ATGGAGAAAATTGGGTGGAGTGTGGCAATACTGGTTTTGACATTGTTAGAGTGTAGCTCTGCAACTTTATCTCCTTCTGGTGTAAACTATGAAGTTGTAGCTTTGATGTCCATAAAAACTTATCTAATTGACCCATACAATGTTTTGGAGAAGTGGGATATTACCTCTGTAGATCCTTGCAGTTGGAGAATGGTTACATGCTCTGCTGATGGCTATGTTTCTGCTCTAGGGCTACCTAGTCAAAGCTTATCTGGGACCTTATCGCCTTGGATTGGAAACCTCAGCAATTTGCAATCTGTGTTGCTGCAGAATAATGCCATTACTGGTCCCATTCCTGCTGCAATTGGCAAATTGGAGAAGCTTCAGACACTTGATCTCTCCAGCAATAAGCTTAATGGCGAAATACCAAGTTCTTTTGGGGATCTTAATAACCTGAACTATTTGCGACTAAACAACAACAGCCTTACTGGAACAATTCCTGAATCTTTATCCAAAGTTGAAAGTCTTACTCTTGTGGATCTATCCTTCAACAATCTCAGTGGTTCCTTGCCTAAAGTATCTGCAAGAACATTCAAAATTATTGGCAACCCTTTAATTTGTGGGCAGAATTCTGTAAACAATTGTTCTGTTGTTTATCCGGAGCCTCTTTCCTTCCCACCGGATGGTGTAAGAGATCAATCAGAATCAAGGACAAAAAGCCATCATTTGGCTATTGCTCTTGGTTCAAGCTTTGGTGCTGCCTTCTTCATCATATTAGTTATCGGGTCATTTGTTTGGTGGCGATACAGGCACAACCAGCAGATTTTCTTTGATGTTAATGATCAATATGATCCAGTGGTATGCTTGGGACATTTGAGAAGATATACCTTTAAGGAACTTCGCTCTGCAACCGATCATTTCAACTCAAAGAATATATTAGGGCAGGGAGGATTTGGAATTGTTTACAGGGGTTGCTTAAGTGATGGTACTATTGTGGCTGTCAAAAGGTTGAAGGACCATACGACTTTCGGCGGTGAGATCCAATTTCAGACCGAAGTTGAACTCATAAGTTTGGCTGTCCATCGGAATCTTCTCCGCCTTTGGGGATTCTGCACCACTGAAAATGAACGCCTTCTTGTATACCCTTATATGCCAAATGGGAGTGTTGCATCGCGATTAAGAGCTGTCCGTGGCACTGTTGGCCACATCGCTCCCGAGTATTTGTCAACCGGCCAATCATCAGAAAAAACCGACGTATTTGGCTTTGGGATCTTGCTTCTTGAGTTAATTACCGGTCAGAAGGCTTTGGATTTTGGACGCGCAGCCAACCAGAAAGGCATAATGCTCGACTGGGTGAAGAAGCTACACCAGGATGGAAAGTTGAATGTAATGGTGGACAAAGAGTTAAAGAACAATTTCGACCGGGTTGAGTTAGAAGAAATGGTGCAGGTTGCCCTTATATGTACCCAATTTAACCCTTCAAATAGGCCCAAAATGTCGGAAGTGTTGAGGATGTTGGAAGGTGATGGCTTAGCAGAGAAATGGGAGGCCTCACAAAGAGCTGAGACACCGAGGTATAGAGGATTTGAGAATAACTATCCTCAAAGATATTCGGACTATATAGAAGAATCTTCGCTTGTGGTTGAAGCAATGGAACTCTCGGGCCCTCGATAG

Network for GWHGAAZE013627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	68	1.00E-09
PF00560.34	LRR_1	120	140	0.082
PF00560.34	LRR_1	144	165	1.2
PF07714.18	PK_Tyr_Ser-Thr	303	388	1.40E-12
PF07714.18	PK_Tyr_Ser-Thr	393	499	6.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.127
	SRR3591706	second leaf	38.433
	SRR3591707	mature leaf	19.001
	SRR3591708	Shoot apex	61.557
	SRR3591709	Stem	44.056
	SRR3591710	White floral bud	29.608
	SRR3591711	White flower	29.663
	SRR3591712	Green floral bud	21.314
	SRR3591713	Yellow flower	11.329
SRP173429	SRR8316895	Juvenile bud stage	23.472
	SRR8316896	Juvenile bud stage	21.214
	SRR8316897	Juvenile bud stage	10.833
	SRR8316894	Third green stage	10.370
	SRR8316900	Third green stage	14.996
	SRR8316901	Third green stage	14.107
	SRR8316898	Complete white stage	4.816
	SRR8316899	Complete white stage	24.166
	SRR8316903	Complete white stage	11.995
	SRR8316902	Silver flowering stage	7.779
	SRR8316904	Silver flowering stage	9.002
	SRR8316905	Silver flowering stage	3.014
	SRR8316906	Gold flowering stage	7.878
	SRR8316907	Gold flowering stage	8.538
	SRR8316908	Gold flowering stage	9.400
SRP132670	SRR6706286	Control	9.020
	SRR6706287	Light intensity 50%	10.071
	SRR6706288	Light intensity 20%	10.981
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.974
	CNS0095593	Slightly white alabastrum(diploid) 2	12.897
	CNS0095594	Slightly white alabastrum(diploid) 3	12.715
	CNS0095595	Whole white alabastrum(diploid) 2	9.465
	CNS0095596	Whole white alabastrum(diploid) 3	7.277
	CNS0095597	Whole white alabastrum(diploid) 4	10.837
	CNS0095598	Silvery flower (diploied) 1	41.200
	CNS0095599	Silvery flower (diploied) 2	37.226
	CNS0095600	Silvery flower (diploied) 3	20.674
	CNS0095601	Golden flower (diploid) 1	39.040
	CNS0095602	Golden flower (diploid) 2	26.940
	CNS0095603	Golden flower (diploid) 3	26.438
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.156
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.984
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.389
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.276
	CNS0095610	Silvery flower (tetraploid) 1	12.259
	CNS0095611	Silvery flower (tetraploid) 2	25.001
	CNS0095612	Silvery flower (tetraploid) 3	12.154
	CNS0095613	Golden flower (tetraploid) 1	4.110
	CNS0095614	Golden flower (tetraploid) 2	6.905
	CNS0095615	Golden flower (tetraploid) 3	2.404
CRA001975	CRR073297	Stem 1	26.796
	CRR073298	Stem 2	23.929
	CRR073299	Stem 3	21.183
	CRR073300	Leaf 1	16.425
	CRR073301	Leaf 2	16.145
	CRR073302	Leaf 3	8.373
	CRR073303	Juvenile bud 1	9.215
	CRR073304	Juvenile bud 2	6.421
	CRR073305	Juvenile bud 3	13.675
	CRR073306	Third green 1	5.531
	CRR073307	Third green 2	4.226
	CRR073308	Third green 3	5.971
	CRR073309	Second white 1	5.834
	CRR073310	Second white 2	4.369
	CRR073311	Second white 3	4.385
	CRR073312	Silver flowering 1	1.677
	CRR073313	Silver flowering 2	1.997
	CRR073314	Silver flowering 3	0.789
	CRR073315	Gold flowering 1	13.155
	CRR073316	Gold flowering 2	16.959
	CRR073317	Gold flowering 3	11.562
	CRR073318	Tawny withering 1	28.010
	CRR073319	Tawny withering 2	20.160
	CRR073320	Tawny withering 3	20.404