Gene detail

Detail information of GWHGAAZE013622

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080803.1	4.5597E-144	PREDICTED: transcription factor bHLH90 [Sesamum indicum]
Swissprot	tr\|Q0WNR2\|BH090_ARATH	4E-80	Transcription factor bHLH90
trEMBL	tr\|A0A068U634\|A0A068U634_COFCA	2E-134	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03971.1}
TAIR10	AT1G10610.1	4E-69	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105416696	105419270	+
GWHAAZE00000003	mRNA	105416696	105419270	+
GWHAAZE00000003	exon	105416696	105416796	+
GWHAAZE00000003	exon	105416915	105417094	+
GWHAAZE00000003	exon	105417200	105417278	+
GWHAAZE00000003	exon	105417603	105417671	+
GWHAAZE00000003	exon	105417753	105418301	+
GWHAAZE00000003	exon	105418399	105418575	+
GWHAAZE00000003	exon	105418763	105418939	+
GWHAAZE00000003	exon	105419178	105419270	+
GWHAAZE00000003	CDS	105416696	105416796	+
GWHAAZE00000003	CDS	105416915	105417094	+
GWHAAZE00000003	CDS	105417200	105417278	+
GWHAAZE00000003	CDS	105417603	105417671	+
GWHAAZE00000003	CDS	105417753	105418301	+
GWHAAZE00000003	CDS	105418399	105418575	+
GWHAAZE00000003	CDS	105418763	105418939	+
GWHAAZE00000003	CDS	105419178	105419270	+

Transcript Sequence
>GWHTAAZE013636 ATGGGAGCTTTGGAAAGATCAATGGAGTGGCTAAGACCCCTTGTCCACTCTAGGGCTTGGGATTACTGTGTTGTTTGGAAGTTAGGGGACGATCCTTCAAGGTTTATTGAATGGATGGGCTGCTGCTGTAATGGTAGTAATGGTGAGAATGTGAAAGAGGAAAGTGATGAAGAGCAATGTTTGGTTCCTCTATGCAGGGATGCTTACAGTCAGCATCCTGCGAGGACAAAAGCCTGTTGCACACTAGCCAAATTTCCTTCATCCATTCCCTTGTATTCTGGGGTTCATGGAGATGTAGCAATGTCAAACCAACCAAGGTGGCTTTGCCATACCAACACCTCTAATTCAAGTCATTCCCTTGAACTAATTGGAACCCAAGTTATAATTCCAGTTGGCAGTGGTCTTATTGAGCTCTTCACTTCAACGCGTGTACCCAAAGATCAAAATCTAATAGAGTACATCAACTCTCAGTATAAAGCTTCCGTGGAACATGAAGCCATGATTGTGCTGAGCTGTACCAATATAAGAAGGCTCAATGAAAAGCCTCGTGATTTTTCCCCAAATGAATACTCGGACAAATCGCTTCAGTACAAAAATTTTGTTCCTAAGCTACAAAATCTTCTCCCAGTATCCCATCCCACCACCTATCCAAGCTTTGAAGGTTCATCCCCTGCTTCAACTCTTTCAGATGAACACCCATCATTGAAATCAGGTTCTGCTCCTTTCTCCCAAGATACTTCACCAACTCAATCAATTGAAAAGCCGAATTGCAATGTGAAAATTTCACCAAAGAGAAGGAGTGAATCTGTTTTGGGGTGTGCCAATGGCCCAATAGATCATAAAGATAATAGGAAGGTGAAGCAAAAGACGGAAAGGGAGCAATACCAATCAAAGAATCTCATTACAGAGAGAAACCGCAGGAATAGAATCAAAGACGGGCTCTTTGCTCTACGTGCTTTAGTCCCCAAGATCACCAAGATGGATAGAGCTGCAATACTGGGAGATGCAATTGACTATATAGATGAGTTGCAAAAGAGCGTGAAGAAATTTGAAGATGAACTTAGGGAAATGTCTGAAGAGGACTCCAACAAGAACAATGCTGAACTAGAGGTCCCTGAGCAAAAAGGCACATGCGTAGGCAGTAAACAAATGGAGGTACAAGTGGAAGTAAACCAGATTGGGACAAGATGTTTCTTGCTTAAATTGATTTGCAATCAAAAGCGGGGTGGGTTCACGAGGTTGATGGAGGCTATAAATTCTTTAGGACTTAAAGTAATTGACGCCAACGTCACCACTTCAAACGGAATGGTCTTGAATGTTCTCAAGGTCGAGACTGGCACAAAGGAGGTTGAACCAAAGATTTTGGAAGATACACTGGCAAAGCTTACGGTTAGAGATTTTGGCAGTGGAGGGGAAGGTCCATGA

Network for GWHGAAZE013622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.7	bHLH-MYC_N	11	156	1.80E-21
PF00010.27	HLH	301	344	3.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.193
	SRR3591706	second leaf	1.999
	SRR3591707	mature leaf	2.777
	SRR3591708	Shoot apex	4.253
	SRR3591709	Stem	16.262
	SRR3591710	White floral bud	3.331
	SRR3591711	White flower	3.314
	SRR3591712	Green floral bud	5.694
	SRR3591713	Yellow flower	0.690
SRP173429	SRR8316895	Juvenile bud stage	3.973
	SRR8316896	Juvenile bud stage	5.055
	SRR8316897	Juvenile bud stage	1.441
	SRR8316894	Third green stage	2.341
	SRR8316900	Third green stage	4.392
	SRR8316901	Third green stage	4.819
	SRR8316898	Complete white stage	1.109
	SRR8316899	Complete white stage	12.278
	SRR8316903	Complete white stage	1.995
	SRR8316902	Silver flowering stage	1.018
	SRR8316904	Silver flowering stage	1.135
	SRR8316905	Silver flowering stage	0.452
	SRR8316906	Gold flowering stage	0.781
	SRR8316907	Gold flowering stage	0.471
	SRR8316908	Gold flowering stage	0.731
SRP132670	SRR6706286	Control	1.041
	SRR6706287	Light intensity 50%	1.486
	SRR6706288	Light intensity 20%	1.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.003
	CNS0095593	Slightly white alabastrum(diploid) 2	10.684
	CNS0095594	Slightly white alabastrum(diploid) 3	11.707
	CNS0095595	Whole white alabastrum(diploid) 2	8.535
	CNS0095596	Whole white alabastrum(diploid) 3	3.942
	CNS0095597	Whole white alabastrum(diploid) 4	7.661
	CNS0095598	Silvery flower (diploied) 1	3.326
	CNS0095599	Silvery flower (diploied) 2	3.576
	CNS0095600	Silvery flower (diploied) 3	1.739
	CNS0095601	Golden flower (diploid) 1	3.088
	CNS0095602	Golden flower (diploid) 2	1.693
	CNS0095603	Golden flower (diploid) 3	1.550
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.665
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.016
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.679
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.921
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.898
	CNS0095610	Silvery flower (tetraploid) 1	1.822
	CNS0095611	Silvery flower (tetraploid) 2	2.125
	CNS0095612	Silvery flower (tetraploid) 3	0.660
	CNS0095613	Golden flower (tetraploid) 1	0.468
	CNS0095614	Golden flower (tetraploid) 2	0.652
	CNS0095615	Golden flower (tetraploid) 3	0.430
CRA001975	CRR073297	Stem 1	5.336
	CRR073298	Stem 2	5.461
	CRR073299	Stem 3	2.992
	CRR073300	Leaf 1	4.673
	CRR073301	Leaf 2	4.203
	CRR073302	Leaf 3	3.626
	CRR073303	Juvenile bud 1	4.622
	CRR073304	Juvenile bud 2	0.569
	CRR073305	Juvenile bud 3	4.058
	CRR073306	Third green 1	0.231
	CRR073307	Third green 2	0.898
	CRR073308	Third green 3	0.915
	CRR073309	Second white 1	0.155
	CRR073310	Second white 2	0.403
	CRR073311	Second white 3	0.453
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.122
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.530
	CRR073316	Gold flowering 2	1.128
	CRR073317	Gold flowering 3	0.225
	CRR073318	Tawny withering 1	1.063
	CRR073319	Tawny withering 2	2.394
	CRR073320	Tawny withering 3	1.723