Gene detail

Detail information of GWHGAAZE013619

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651426.1	0	PREDICTED: pantothenate kinase 1 [Vitis vinifera]
Swissprot	tr\|Q8L5Y9\|PANK2_ARATH	1E-175	Pantothenate kinase 2
trEMBL	tr\|D7TDH2\|D7TDH2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28545.3}
TAIR10	AT4G32180.3	6E-147	pantothenate kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105395450	105401249	+
GWHAAZE00000003	mRNA	105395450	105401249	+
GWHAAZE00000003	exon	105395450	105395651	+
GWHAAZE00000003	exon	105396810	105396856	+
GWHAAZE00000003	exon	105397474	105397590	+
GWHAAZE00000003	exon	105398091	105398210	+
GWHAAZE00000003	exon	105399093	105399187	+
GWHAAZE00000003	exon	105399280	105399373	+
GWHAAZE00000003	exon	105399624	105399755	+
GWHAAZE00000003	exon	105399991	105400103	+
GWHAAZE00000003	exon	105400756	105401249	+
GWHAAZE00000003	CDS	105395450	105395651	+
GWHAAZE00000003	CDS	105396810	105396856	+
GWHAAZE00000003	CDS	105397474	105397590	+
GWHAAZE00000003	CDS	105398091	105398210	+
GWHAAZE00000003	CDS	105399093	105399187	+
GWHAAZE00000003	CDS	105399280	105399373	+
GWHAAZE00000003	CDS	105399624	105399755	+
GWHAAZE00000003	CDS	105399991	105400103	+
GWHAAZE00000003	CDS	105400756	105400960	+
GWHAAZE00000003	three_prime_UTR	105400961	105401249	+

Transcript Sequence
>GWHTAAZE013633 ATCCACTTTTCGCTCGCAGGCACTCTTATCAAGATGGTGTACTTCTCAAGTAATAGTGATGATCAGGGTAAGAGGTCTTTAAAGGAAAATGTTAATAGGAACTGCCCTATTCTCAATGGGAGGCTTAACTTTGTGAAGTTTGAGACAAGACTGATTAATGACTGCTTAGAATTTATTTCATCCAAGCAGCTTCACCACTACGGTGGTTCTAAGCATGACACAACTGCCCATGACAAGAATATTATAAAGGCCACAGGTGGCGGGGCATTCAAGTTTGCAGATCTGTTTAATGAAAAGCTTGGAATTAGTCTTGACAAGGTTGATGAAATGGATTGTCTTGTTGCTGGAGCAAATTTTCTTCTTAAGGCAGTCCATCAGGAAGCTTTTACATACATGGATGGTCAGAAGGAATATGTCAAGATTGACCACAATGATTTGTACCCCTATCTCCTTGTTAATATTGGCTCAGGTGTTAGCATGATAAAGGTGGATGGAAATGACAAGTTTGAGAGAGTCAGCGGAACTAGTGTTGGTGGTGGGACCTTTTGGGGTTTGGGAAAGCTTTTAACCAAGTGCAAGAGTTTTGATGATTTGCTGGAGTTGAGTCTTAAGGGAAACAATAGAGTGATAGACATGCTTGTTGGGGACATCTATGGTGGAATGGACTACAATAAGATCGGTCTTAAATCAACAGCCATTGCTTCTAGCTTTGGTAAGGCAATTTACGAAAACAAAGAAATTGAAGATTATAAACCTGAAGATGTAGCCCGATCCCTCCTGAGAATGATTTCGAATAATATTGGACAAATCTCTTACTTGAATGCACTTCGGTTTGGACTCAAACGAATATTTTTTGGAGGCTTTTTCATTCGGAGTCATGCTTATACCATGGACACGATCTCAGTTGCAGTTAATTTCTGGTCGAAAGGTGAGGCAAAAGCAATGTTCTTGAGGCACGAAGGTTTTCTTGGAGCGTTAGGGGCATTCATGAACTATCAAAAGCAGAGTCTTGATGACCTGGCTGCCTATCAATTAGTGGAACAACTCCCGAAGAGTGGGTCCAACGAAGAGGACAACCTTCTTGAGAATGGAAGTATAGACTTGAGCTTGCAGCTGAGCAGATGAAGCAAACAAACGGATATAGCAATACCGGAATTTGTAGTAAAAAATACATGGGCTATTCTTTGTTGCTTACTACTATTGCCACGGTAAAAGCAGGCAAAGTTAACATAAGTCAACATGCATATGATATGTATCATTTAGGAGTTGGAGTTGGAGTTGGAGTCAGAGTCGCGTTCCACAATAATTGAGATTGATTTGATGGAAGCAGAGTAAATGTGCTTATTAAGGTCAAAAGCTCATGTCTTAATAGAATGCTAATATTGTTGAAAGGGCAATGAAAGGATCACTAAAT

Network for GWHGAAZE013619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0291	GO:0004594 pantothenate kinase activity GOslim:molecular_function GO:0015937 coenzyme A biosynthetic process GOslim:biological_process GO:0007275 multicellular organism development GOslim:biological_process map00770 Pantothenate and CoA biosynthesis

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03630.15	Fumble	5	330	6.60E-132

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09680	coaW	Metabolic pathways	map01100
K09680	coaW	Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0015937	biological_process	coenzyme A biosynthetic process
GO:0004594	molecular_function	pantothenate kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.013
	SRR3591706	second leaf	7.011
	SRR3591707	mature leaf	8.777
	SRR3591708	Shoot apex	13.865
	SRR3591709	Stem	38.344
	SRR3591710	White floral bud	15.684
	SRR3591711	White flower	30.590
	SRR3591712	Green floral bud	16.961
	SRR3591713	Yellow flower	37.659
SRP173429	SRR8316895	Juvenile bud stage	20.412
	SRR8316896	Juvenile bud stage	29.377
	SRR8316897	Juvenile bud stage	16.351
	SRR8316894	Third green stage	8.477
	SRR8316900	Third green stage	25.314
	SRR8316901	Third green stage	22.900
	SRR8316898	Complete white stage	11.507
	SRR8316899	Complete white stage	34.370
	SRR8316903	Complete white stage	19.389
	SRR8316902	Silver flowering stage	15.883
	SRR8316904	Silver flowering stage	26.603
	SRR8316905	Silver flowering stage	13.256
	SRR8316906	Gold flowering stage	47.957
	SRR8316907	Gold flowering stage	45.675
	SRR8316908	Gold flowering stage	52.772
SRP132670	SRR6706286	Control	9.854
	SRR6706287	Light intensity 50%	10.998
	SRR6706288	Light intensity 20%	11.074
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.257
	CNS0095593	Slightly white alabastrum(diploid) 2	16.546
	CNS0095594	Slightly white alabastrum(diploid) 3	25.864
	CNS0095595	Whole white alabastrum(diploid) 2	15.585
	CNS0095596	Whole white alabastrum(diploid) 3	14.340
	CNS0095597	Whole white alabastrum(diploid) 4	15.257
	CNS0095598	Silvery flower (diploied) 1	35.543
	CNS0095599	Silvery flower (diploied) 2	30.413
	CNS0095600	Silvery flower (diploied) 3	36.445
	CNS0095601	Golden flower (diploid) 1	33.467
	CNS0095602	Golden flower (diploid) 2	43.823
	CNS0095603	Golden flower (diploid) 3	41.261
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.754
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.990
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.408
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.694
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.025
	CNS0095610	Silvery flower (tetraploid) 1	39.280
	CNS0095611	Silvery flower (tetraploid) 2	39.305
	CNS0095612	Silvery flower (tetraploid) 3	32.000
	CNS0095613	Golden flower (tetraploid) 1	37.769
	CNS0095614	Golden flower (tetraploid) 2	44.490
	CNS0095615	Golden flower (tetraploid) 3	39.475
CRA001975	CRR073297	Stem 1	12.657
	CRR073298	Stem 2	9.911
	CRR073299	Stem 3	6.769
	CRR073300	Leaf 1	9.459
	CRR073301	Leaf 2	10.172
	CRR073302	Leaf 3	7.663
	CRR073303	Juvenile bud 1	6.620
	CRR073304	Juvenile bud 2	5.248
	CRR073305	Juvenile bud 3	7.926
	CRR073306	Third green 1	2.914
	CRR073307	Third green 2	2.155
	CRR073308	Third green 3	3.381
	CRR073309	Second white 1	5.475
	CRR073310	Second white 2	7.513
	CRR073311	Second white 3	7.954
	CRR073312	Silver flowering 1	7.674
	CRR073313	Silver flowering 2	4.232
	CRR073314	Silver flowering 3	6.120
	CRR073315	Gold flowering 1	4.414
	CRR073316	Gold flowering 2	5.851
	CRR073317	Gold flowering 3	2.740
	CRR073318	Tawny withering 1	11.261
	CRR073319	Tawny withering 2	20.744
	CRR073320	Tawny withering 3	13.702