Gene detail

Detail information of GWHGAAZE013603

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007044545.1	0	Serine-threonine protein kinase, putative [Theobroma cacao]
Swissprot	tr\|Q8LEB6\|Y5185_ARATH	2E-59	Probable receptor-like protein kinase At5g18500
trEMBL	tr\|A0A061E7N5\|A0A061E7N5_THECC	0	Serine-threonine protein kinase, putative {ECO:0000313\|EMBL:EOY00377.1}
TAIR10	AT3G59110.1	4E-54	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105160047	105163081	-
GWHAAZE00000003	mRNA	105160047	105163081	-
GWHAAZE00000003	exon	105162418	105163081	-
GWHAAZE00000003	exon	105162268	105162315	-
GWHAAZE00000003	exon	105161683	105161793	-
GWHAAZE00000003	exon	105161472	105161585	-
GWHAAZE00000003	exon	105160980	105161198	-
GWHAAZE00000003	exon	105160782	105160897	-
GWHAAZE00000003	exon	105160436	105160696	-
GWHAAZE00000003	exon	105160047	105160348	-
GWHAAZE00000003	CDS	105162418	105163081	-
GWHAAZE00000003	CDS	105162268	105162315	-
GWHAAZE00000003	CDS	105161683	105161793	-
GWHAAZE00000003	CDS	105161472	105161585	-
GWHAAZE00000003	CDS	105160980	105161198	-
GWHAAZE00000003	CDS	105160782	105160897	-
GWHAAZE00000003	CDS	105160436	105160696	-
GWHAAZE00000003	CDS	105160118	105160348	-
GWHAAZE00000003	three_prime_UTR	105160047	105160117	-

Transcript Sequence
>GWHTAAZE013617 ATGGCTATATCCTCATCAAATCCTCACTTCCTTAATCACACAAAGCATAAAAAACCATCTTCTTCATTAATTGCACTCTTTGCTTTCTTTATCATTATTAAATCTGCATTTCCCCTGTCCCCAAACACTAGTTGTCTACTCGATCTTCGACTTTCTTCACCCGAGAACAACTCAAATTGCACATCAGGAAACTGGGGCGGCTTCCTCAGCAACAATTGTTGCGGTTCAACTTTTAATGGATACTTAGACGGGCTGGGTCAGCGGGCTAACCAAATGGGTCAAATATTCTTGAATTCAGCAGAGCAAAACGTGTGCTTAGCTTCAATGAAGAGCATTAATCGTTATGTTTTCAGCTGTGGAATCGAAAAGCTAACAAGTGGGTTCGGTGGCTGCTCCAATTACACTGTTAAGGATGTTGTTGATAAACTAGGAAAAAGATTGAAAAGTTTAAGTGAAGATTGTAAGGTTTTGAGTTTGAATGGTGAATCGGACAACGCTTGTAGTTCTTGTTTGAGGAGGTGGGAAAGTATGGGTATGTCGGTTAATGTTGAATCCAATGTTTGTAAATTTGCAGTGTTGGTTTCGTTGATAAGTCAGCGGATTTATGATGATAAAGGTCTTGAGGCAGTTTATAAGTGCCTTGGCGGAAAAACTCTTCCTCTAGACGATGAAGGAGTGAAGAAGAGGGGAAAGACGATTCAGGTTAGCACAGCTATGTGGGTTCTAATTGGAGGTCTAGTGGGGATTGCAGTAATAATAATAGTTGCGACGTGGATCTTATCAAGAAAACCAGTTAAATCAAAGCTCCCAATAGGAGAAGATGAATCAAATGATTCATATTCCGAAGAGTCCAGTTGTCATAAAATAGCAATTAAGCAAGTTTATTCAGCCACAGACAATCTCAGTGCATCAAACTTCATTGGCCAAGGAATAGCTGGAAAGGTGTATAAAGGAACACTATCCAATGGTCAGCACATAGCAGTCAAGCACATAATCAATGACGGGGAAATGGAAACGTTTGTTAGGGAAGTCACAAGTCTATCACACGTGAGACATCCGAATCTTGTAACTTTGCTAGGCCATTGTGAGGGTGAAGATGAGTGCTTTCTTGTTTACGAGCTCTGTCATAAGGGGAACCTCGCCGAGTGGATTTTTGGTAAAGATAGAAACTTATCTTGGATCCAAAGACTTGAGATTGCCATTGATTGTGCTAGGGGTCTCTGGTTTCTCCATACATATCCTGAAGGCTGCATTGTTCATCGTGATATCAAGCCAACAAATATTCTGATATGCGATAACTTTCAAGGGAAACTCTCTGATTTTGGGCTATCTAAAGTTATTGACATGGGTCAGTCCTATGTAAGTTCGGAAGTGAGAGGAACATTTGGCTATGTGGATCCTGAATATCAGAAGAATCGCCATGTTAATTCTTCAGGTGATGTTTATAGTTTTGGAATAGTGCTTCTACAACTTCTATCGGGCCAGAGGGTTATTAATCTGGATTTGGCTAAACCAATGCCTCTGGATAAAAGGGCTAAAGTCCTCACTAGGGGTGGGAATATGACAGAGTTTGCTGATCTCAAACTTGATGACAAGTACCCGGTTGAAGCCTTTGAACTCGTATTAAGGCTGGCTTTGACATGCACGGGGCTTAAGCAGCAAAGACCGTCAATGGAACAAGTGGTTTCAAAACTAGAGAAAGCTCTCGACATTTCAACAAGAGTGAAGTCTGTTAAGCCTCAATTCACACTACGCATCGATTAAAATAGAGTAAACCTTTCATTTTCATATTGAAAACTTCAAACGTGTTAGAATGACTTAAATAGGAGATAATC

Network for GWHGAAZE013603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF19160.1	SPARK	41	180	2.20E-15
PF00069.26	Pkinase	305	562	1.30E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_URK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.119
	SRR3591706	second leaf	3.244
	SRR3591707	mature leaf	18.907
	SRR3591708	Shoot apex	3.000
	SRR3591709	Stem	3.111
	SRR3591710	White floral bud	15.497
	SRR3591711	White flower	17.878
	SRR3591712	Green floral bud	9.503
	SRR3591713	Yellow flower	7.353
SRP173429	SRR8316895	Juvenile bud stage	1.414
	SRR8316896	Juvenile bud stage	1.958
	SRR8316897	Juvenile bud stage	0.127
	SRR8316894	Third green stage	1.375
	SRR8316900	Third green stage	4.602
	SRR8316901	Third green stage	3.482
	SRR8316898	Complete white stage	0.801
	SRR8316899	Complete white stage	3.598
	SRR8316903	Complete white stage	1.909
	SRR8316902	Silver flowering stage	1.857
	SRR8316904	Silver flowering stage	3.662
	SRR8316905	Silver flowering stage	1.239
	SRR8316906	Gold flowering stage	1.649
	SRR8316907	Gold flowering stage	2.609
	SRR8316908	Gold flowering stage	0.789
SRP132670	SRR6706286	Control	1.101
	SRR6706287	Light intensity 50%	1.912
	SRR6706288	Light intensity 20%	2.021
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.274
	CNS0095593	Slightly white alabastrum(diploid) 2	1.938
	CNS0095594	Slightly white alabastrum(diploid) 3	1.836
	CNS0095595	Whole white alabastrum(diploid) 2	2.298
	CNS0095596	Whole white alabastrum(diploid) 3	1.779
	CNS0095597	Whole white alabastrum(diploid) 4	3.569
	CNS0095598	Silvery flower (diploied) 1	6.330
	CNS0095599	Silvery flower (diploied) 2	4.119
	CNS0095600	Silvery flower (diploied) 3	2.255
	CNS0095601	Golden flower (diploid) 1	3.867
	CNS0095602	Golden flower (diploid) 2	2.524
	CNS0095603	Golden flower (diploid) 3	2.468
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.018
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.238
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.033
	CNS0095610	Silvery flower (tetraploid) 1	0.134
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.133
	CNS0095615	Golden flower (tetraploid) 3	0.353
CRA001975	CRR073297	Stem 1	3.583
	CRR073298	Stem 2	2.821
	CRR073299	Stem 3	0.148
	CRR073300	Leaf 1	3.770
	CRR073301	Leaf 2	3.852
	CRR073302	Leaf 3	0.295
	CRR073303	Juvenile bud 1	0.581
	CRR073304	Juvenile bud 2	0.301
	CRR073305	Juvenile bud 3	0.441
	CRR073306	Third green 1	0.102
	CRR073307	Third green 2	0.146
	CRR073308	Third green 3	0.302
	CRR073309	Second white 1	0.369
	CRR073310	Second white 2	0.478
	CRR073311	Second white 3	0.132
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.026
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.441
	CRR073316	Gold flowering 2	0.661
	CRR073317	Gold flowering 3	0.030
	CRR073318	Tawny withering 1	0.594
	CRR073319	Tawny withering 2	1.379
	CRR073320	Tawny withering 3	0.534