Gene detail

Detail information of GWHGAAZE013602

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP26565.1	hypothetical protein JCGZ_17723 [Jatropha curcas]
Swissprot	tr\|Q9SU63\|AL2B4_ARATH	Aldehyde dehydrogenase family 2 member B4, mitochondrial (Precursor)
trEMBL	tr\|A0A067K2T2\|A0A067K2T2_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP26565.1}
TAIR10	AT1G23800.1	aldehyde dehydrogenase 2B7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105155423	105159542	+
GWHAAZE00000003	mRNA	105155423	105159542	+
GWHAAZE00000003	exon	105155423	105155495	+
GWHAAZE00000003	exon	105156188	105156325	+
GWHAAZE00000003	exon	105156458	105156600	+
GWHAAZE00000003	exon	105156683	105156836	+
GWHAAZE00000003	exon	105157111	105157340	+
GWHAAZE00000003	exon	105157510	105157599	+
GWHAAZE00000003	exon	105158062	105158235	+
GWHAAZE00000003	exon	105158326	105158463	+
GWHAAZE00000003	exon	105158638	105158775	+
GWHAAZE00000003	exon	105159114	105159175	+
GWHAAZE00000003	exon	105159269	105159542	+
GWHAAZE00000003	CDS	105155423	105155495	+
GWHAAZE00000003	CDS	105156188	105156325	+
GWHAAZE00000003	CDS	105156458	105156600	+
GWHAAZE00000003	CDS	105156683	105156836	+
GWHAAZE00000003	CDS	105157111	105157340	+
GWHAAZE00000003	CDS	105157510	105157599	+
GWHAAZE00000003	CDS	105158062	105158235	+
GWHAAZE00000003	CDS	105158326	105158463	+
GWHAAZE00000003	CDS	105158638	105158775	+
GWHAAZE00000003	CDS	105159114	105159175	+
GWHAAZE00000003	CDS	105159269	105159542	+

Transcript Sequence
>GWHTAAZE013616 ATGTCGGCTCGATGGATCACATCGCTCCTTTCTCGCTCCTCGTTCACTCGTTCGCTTTCTTTACCATCTCCATGGAAGAATTCTTACCTGGGCAGAGAAATTTGCCAATACATTAGTCCTGCTGGTGTTGTTGAGGAGCCAATCAAGCCTCCTGTGAGTGTAAACCACAATCAGCTTCTTATCAATGGAAAATTTGTTGATGCAGCATCTGGGAAAACATTTCCAACTCTGGATCCGAGAACAGGGGAAGTGATTACTCATGTTTCCGAAGGTGATGAAGAAGACATAAACCGAGCAGTAGCTGCTGCTCGCAAGGCTTTTGATCAAGGACCATGGCCCAAAATGACTGCTTATGAAAGATCAAGAATAATGTTGCGGTTTGCAGATTTGACTGAAAAGTATAATGATGAAATTGCAACACTTGAGACCTGGGATAATGGCAAGCCACTTTCACAGGCTGCTAAGATAGAAACGCCTATGTTCACACGTCTATTTCGATACTATGCTGGTTGGGCCGATAAAATACATGGTCTAACTGTTCCTGCTGATGGACCATTTCATGTGCAAACACTGCATGAACCAATTGGTGTTGCTGGTCAGATAATACCATGGAACTTTCCACTTCTCATGTATGCTTGGAAGATTGGTCCTGCATTGGCATGTGGTAACACTGTTGTTCTCAAGACGGCAGAGCTTACACCATTATCTGCTCTCTATGTATCAAAGCTATTCCATGAGGCTGGACTTCCTGAAGGCGTTCTGAATGTGGTTTCTGGTTTTGGTCCCACGGCTGGTTCAGCTCTTAGCAGACATATGGATGTGGACAAGCTTGCTTTCACTGGATCAACGGCTACTGGAAAACTTGTGCTTGAATTGTCGGCTAAAAGCAATCTTAAGCCTGTGAGTTTAGAACTTGGGGGAAAATCCCCTTTCATTGTCTGCGAGGATGCTGACGTGGACCAAGCTGTTGAGCTGGCCCACTTTGCTCTATTCTTTAACCAGGGACAGTGCTGCTGTGCTGGATCTCGTACATATGTTCACGAAAAGATATACGATGAATTTGTAGAGAAGGCAAAGGCACGTGCTATGAAACGCGTTGTTGGTGATCCATTCAAGGATGGAGTTGAACAAGGTCCTCAGATTGATTCCAAGCAATTTGACAAGATCCTTAAGTACATAAGGTCTGGCGTAGACAGTGGAGCTACTCTTGAAAGTGGAGGAGAGAGATTTGGCTCCAAAGGCTACTTTATTCAACCCACTGTTTTCTCTAATGTCCAGGATGATATGTTGATTGCAAGGGATGAGATCTTTGGTCCAGTGCAATCAATTTTGAAGTACAAGGATCTTAACGAAGTGATTAAAAGGGCAAATGCTACTCATTATGGACTGGCTGCAGGGGTGTTCACCAAGAACATTGATACTGCCAACACGTTGGTACGAGCATTGAGAGTGGGGACTGTATGGATTAATTGCTTCGATACCTTTGATGCTGCAATTCCTTTTGGTGGATACAAGATGAGTGGACAAGGCAGAGAAAAAGGAGAGTACGGTCTAAAGAACTACTTACAAGTGAAGGCTGTGGTTACTCAGTTGAGGAATCCAGCATGGTTGTAA

Network for GWHGAAZE013602

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	65	527	1.10E-178

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00128	ALDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Ascorbate and aldarate metabolism	map00053
		Pyruvate metabolism	map00620
		Fatty acid degradation	map00071
		Glycerolipid metabolism	map00561
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Arginine and proline metabolism	map00330
		Histidine metabolism	map00340
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Insect hormone biosynthesis	map00981
		Limonene and pinene degradation	map00903
		Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.171
	SRR3591706	second leaf	1.526
	SRR3591707	mature leaf	0.753
	SRR3591708	Shoot apex	4.303
	SRR3591709	Stem	2.251
	SRR3591710	White floral bud	4.862
	SRR3591711	White flower	0.504
	SRR3591712	Green floral bud	63.484
	SRR3591713	Yellow flower	0.146
SRP173429	SRR8316895	Juvenile bud stage	22.626
	SRR8316896	Juvenile bud stage	53.682
	SRR8316897	Juvenile bud stage	20.738
	SRR8316894	Third green stage	18.054
	SRR8316900	Third green stage	61.505
	SRR8316901	Third green stage	65.259
	SRR8316898	Complete white stage	0.917
	SRR8316899	Complete white stage	3.272
	SRR8316903	Complete white stage	0.793
	SRR8316902	Silver flowering stage	0.556
	SRR8316904	Silver flowering stage	0.349
	SRR8316905	Silver flowering stage	0.215
	SRR8316906	Gold flowering stage	0.885
	SRR8316907	Gold flowering stage	0.494
	SRR8316908	Gold flowering stage	0.554
SRP132670	SRR6706286	Control	24.178
	SRR6706287	Light intensity 50%	24.613
	SRR6706288	Light intensity 20%	23.644
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.247
	CNS0095593	Slightly white alabastrum(diploid) 2	31.911
	CNS0095594	Slightly white alabastrum(diploid) 3	49.994
	CNS0095595	Whole white alabastrum(diploid) 2	48.436
	CNS0095596	Whole white alabastrum(diploid) 3	60.388
	CNS0095597	Whole white alabastrum(diploid) 4	39.558
	CNS0095598	Silvery flower (diploied) 1	2.001
	CNS0095599	Silvery flower (diploied) 2	2.547
	CNS0095600	Silvery flower (diploied) 3	1.110
	CNS0095601	Golden flower (diploid) 1	2.693
	CNS0095602	Golden flower (diploid) 2	1.281
	CNS0095603	Golden flower (diploid) 3	1.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	78.223
	CNS0095605	Slightly white alabastrum(tetraploid) 2	67.126
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	101.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	106.728
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.434
	CNS0095610	Silvery flower (tetraploid) 1	1.333
	CNS0095611	Silvery flower (tetraploid) 2	1.213
	CNS0095612	Silvery flower (tetraploid) 3	3.536
	CNS0095613	Golden flower (tetraploid) 1	1.766
	CNS0095614	Golden flower (tetraploid) 2	1.507
	CNS0095615	Golden flower (tetraploid) 3	2.076
CRA001975	CRR073297	Stem 1	20.223
	CRR073298	Stem 2	16.689
	CRR073299	Stem 3	12.190
	CRR073300	Leaf 1	20.871
	CRR073301	Leaf 2	23.086
	CRR073302	Leaf 3	18.482
	CRR073303	Juvenile bud 1	15.467
	CRR073304	Juvenile bud 2	13.172
	CRR073305	Juvenile bud 3	0.690
	CRR073306	Third green 1	1.635
	CRR073307	Third green 2	1.378
	CRR073308	Third green 3	1.252
	CRR073309	Second white 1	0.357
	CRR073310	Second white 2	0.421
	CRR073311	Second white 3	0.264
	CRR073312	Silver flowering 1	0.710
	CRR073313	Silver flowering 2	0.876
	CRR073314	Silver flowering 3	0.361
	CRR073315	Gold flowering 1	1.590
	CRR073316	Gold flowering 2	1.111
	CRR073317	Gold flowering 3	0.984
	CRR073318	Tawny withering 1	1.139
	CRR073319	Tawny withering 2	0.692
	CRR073320	Tawny withering 3	0.800