Gene detail

Detail information of GWHGAAZE013598

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010274327.1	PREDICTED: threonine--tRNA ligase, mitochondrial-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|O04630\|SYTM_ARATH	Threonine--tRNA ligase, mitochondrial (Precursor)
trEMBL	tr\|A0A068TW21\|A0A068TW21_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00192.1}
TAIR10	AT5G26830.1	Threonyl-tRNA synthetase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105038777	105056840	-
GWHAAZE00000003	mRNA	105038777	105056840	-
GWHAAZE00000003	exon	105038777	105039077	-
GWHAAZE00000003	exon	105039265	105039336	-
GWHAAZE00000003	exon	105043175	105043246	-
GWHAAZE00000003	exon	105046330	105046551	-
GWHAAZE00000003	exon	105046659	105046751	-
GWHAAZE00000003	exon	105048255	105048347	-
GWHAAZE00000003	exon	105049203	105049289	-
GWHAAZE00000003	exon	105049389	105049421	-
GWHAAZE00000003	exon	105051258	105051352	-
GWHAAZE00000003	exon	105052207	105052291	-
GWHAAZE00000003	exon	105052506	105052592	-
GWHAAZE00000003	exon	105052677	105052773	-
GWHAAZE00000003	exon	105052863	105052951	-
GWHAAZE00000003	exon	105054192	105054281	-
GWHAAZE00000003	exon	105054364	105054492	-
GWHAAZE00000003	exon	105054580	105054654	-
GWHAAZE00000003	exon	105054889	105054984	-
GWHAAZE00000003	exon	105055635	105055694	-
GWHAAZE00000003	exon	105055792	105056029	-
GWHAAZE00000003	exon	105056572	105056840	-
GWHAAZE00000003	CDS	105056572	105056840	-
GWHAAZE00000003	CDS	105055792	105056029	-
GWHAAZE00000003	CDS	105055635	105055694	-
GWHAAZE00000003	CDS	105054889	105054984	-
GWHAAZE00000003	CDS	105054580	105054654	-
GWHAAZE00000003	CDS	105054364	105054492	-
GWHAAZE00000003	CDS	105054192	105054281	-
GWHAAZE00000003	CDS	105052863	105052951	-
GWHAAZE00000003	CDS	105052677	105052773	-
GWHAAZE00000003	CDS	105052506	105052592	-
GWHAAZE00000003	CDS	105052207	105052291	-
GWHAAZE00000003	CDS	105051258	105051352	-
GWHAAZE00000003	CDS	105049389	105049421	-
GWHAAZE00000003	CDS	105049203	105049289	-
GWHAAZE00000003	CDS	105048255	105048347	-
GWHAAZE00000003	CDS	105046659	105046751	-
GWHAAZE00000003	CDS	105046330	105046551	-
GWHAAZE00000003	CDS	105043175	105043246	-
GWHAAZE00000003	CDS	105039265	105039336	-
GWHAAZE00000003	CDS	105038982	105039077	-
GWHAAZE00000003	three_prime_UTR	105038777	105038981	-

Transcript Sequence
>GWHTAAZE013612 ATGCTATGTACCCAATTGTCGCGGCGATTCTCGTTTCCCTCTCGCTGTTATCTACCCTTTAAGTTTAAGCTCTCATTCCGCCGGTTCTCATCATCGCCACCGCCGATAACAATGGGGAAAGCAGCAAATTCTGAGCCCAAGTCCTCTCCGGCACACCCCAAGGACGAAGCCTACCTCAAAACCGTCATCCCCAAACGCATCAGCCTCTTCGAATCCATTCAAGCTCGACAGACCGAACATCTTCAATCCATCGCCGGTGATCCAATCAAGATTACTTTGCCGAATGGGACGGTGAAAGAAGGGAAGAAGTGGATGACAACTCCGTTAGACATCGCGAAGGAGATTTCAAAGAGTTTGGCATCTAACGCTTTGATTTCTCAAGTGAATGGAGTGCTGTGGGACATGTTGAGGCCACTCGACGGCGACTGTGAGCTCAAACTATTCACCTTTGACAGTGATGAAGGTCGCGACACTTTTTGGCATTCGAGTGCACATATTCTTGGCCAGTCTCTTGAAATGACCTATGGATGCAAGTTGTGCATTGGGCCTTGTACTACAAGAGGGGAGGGTTTCTATTATGATGCATTTTATGGTGAAGATTCACCGGGATTAAATGAGCAACACTTTGAACAGATTGCATCAGGAGCAAAGAAAGCTGTTTCGGAAAAACAAGCTTTTGAGCGTATAGAAGTTTCAAGACAACAAGCTCTAGAGATATTTTCTGATAATAGTTTCAAGGTTGAAATCATTAATGATTTACCGGAAGACAAAACTATCACCGTATATAGATGTGGTCCATTAGTTGATTTGTGTCGTGGACCACACATACCAAATACATCTTTCGTGAAAGCATTTGCTTGTTTAAAGGCTTCATCAGCCTATTGGAGGGGAAATAAAGACCGTGAAAGTTTACAAAGAGTTTATGGGATATCTTATCCAGATCAAAAACGACTGAAGGAATATATTGCCATGCTGGAAGAAGCAAAGAAATATGACCACAGAGAATTGACTAAAAAACAAGAGCTGTTCTTTTTCCACCCACTTAGCCCTGGGAGTTGTTTCTTCCTTCCTCATGGTACTCGAATTTGCAACAAGTTGCTGGAATTCATACGTGATCAGTATTGGAAGAGAGGTTACGAGGAGGTTTGTACTCCAAATATGTATAACATGCAACTCTGGGAAACCTCTGGACATGCTGCAAATTACAAGGAGAACATGTTTTTATTTGAGATTGAGAAGCAAGAGTTTGGACTTAAGCCAATGAACTGCCCCGGCCATTGTTTAATATTTGATCATAGAGTTCGTTCATACAGGGAGCTTCCTCTTCGCCTAGCTGATTTTGGAGTGTTGCATAGGAATGAGGCCAGTGGTGCACTTACTGGGTTAACTCGTGTCAGGAGATTTCAGCAGGATGATGCTCATATCTTCTGCAGGGAGTCCCAGATCAAAGACGAAGTCAAGAATGTATTAGAATTCATAAATTATGCGTATGATGTGTTCGGGTTCACTTTTGACCTGAAGCTATCAACGAGGCCAGAGAAATATCTTGGAGACTTAGCAACTTGGGACAAAGCTGAAGCTGCTCTTACAGATGCACTGAATGAGTTTGGGAAGCCATGGCAGATAAATGAAGCCGATGGGGCATTTTATGGGCCCAAGATTGATATTAGCGTTTCTGATGCAATGAAAAGAAAATTCCAGTGTGCAACTTTGCAGCTGGACTTCCAACTTCCTTCTCGTTTCAATCTATCTTATTCAGCCGAAGATGAAAGTAAGAGGGAGAGACCTGTTATGATACACAGAGCTATTCTAGGATCTGTTGAACGCATGTTTGCTATACTTCTGGAGCACTATAAGGGAAAATGGCCTTTCTGGCTTAGTCCACGTCAAGCAATTGTTTGCCCCGTGTCAGACAAATCCCAATCATATGGATTACAGGTGCGGGATCAGATTCATGCAGCTGGTTATTATGTCGATGTTGATACAAGCGACAGAACAATTCAGAAAAAGGTACGAGAAGCTCAGTTGGCGCAATACAACTATATATTGGTTGTCGGTGAAGAGGAAGCCAACACTGGAAAGGTAAGTGTGAGAGTGAGGGACAAGCCAGAGCATTCGGTTAAGAGCATTGAGGACTTGCTCGCACACTTCAAAGAAGAAGTTGCCGCTTTTCATTAGTGGTGTGGTGTTCTTGATATACAATTGAATGGTTAATCTTGTGAGTAAACAAAACATTTGACTTTAATGTGAAAGAACATGTATTGTTAAGAAAAAAGTGTCTTGTGATGTCACTTTTAAAAGAACACCATCTTTAGATATTAATTTGTTTTTCCCGGTTGAGTATCAACTCGTTTATCATCTTTAGATATTAATTTTTTTCCCA

Network for GWHGAAZE013598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02824.22	TGS	89	149	1.30E-12
PF07973.15	tRNA_SAD	259	308	8.40E-13
PF00587.26	tRNA-synt_2b	409	618	1.70E-38
PF03129.21	HGTP_anticodon	630	719	8.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01868	TARS, thrS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006435	biological_process	threonyl-tRNA aminoacylation
GO:0043039	biological_process	tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004829	molecular_function	threonine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.864
	SRR3591706	second leaf	19.619
	SRR3591707	mature leaf	23.297
	SRR3591708	Shoot apex	76.067
	SRR3591709	Stem	52.104
	SRR3591710	White floral bud	31.664
	SRR3591711	White flower	55.689
	SRR3591712	Green floral bud	54.440
	SRR3591713	Yellow flower	40.887
SRP173429	SRR8316895	Juvenile bud stage	36.585
	SRR8316896	Juvenile bud stage	57.775
	SRR8316897	Juvenile bud stage	26.280
	SRR8316894	Third green stage	22.051
	SRR8316900	Third green stage	66.819
	SRR8316901	Third green stage	59.554
	SRR8316898	Complete white stage	16.988
	SRR8316899	Complete white stage	64.696
	SRR8316903	Complete white stage	23.925
	SRR8316902	Silver flowering stage	20.976
	SRR8316904	Silver flowering stage	25.422
	SRR8316905	Silver flowering stage	8.747
	SRR8316906	Gold flowering stage	38.278
	SRR8316907	Gold flowering stage	35.612
	SRR8316908	Gold flowering stage	38.327
SRP132670	SRR6706286	Control	46.928
	SRR6706287	Light intensity 50%	50.034
	SRR6706288	Light intensity 20%	54.742
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.877
	CNS0095593	Slightly white alabastrum(diploid) 2	47.195
	CNS0095594	Slightly white alabastrum(diploid) 3	40.815
	CNS0095595	Whole white alabastrum(diploid) 2	35.582
	CNS0095596	Whole white alabastrum(diploid) 3	39.366
	CNS0095597	Whole white alabastrum(diploid) 4	30.730
	CNS0095598	Silvery flower (diploied) 1	36.018
	CNS0095599	Silvery flower (diploied) 2	38.568
	CNS0095600	Silvery flower (diploied) 3	43.622
	CNS0095601	Golden flower (diploid) 1	26.695
	CNS0095602	Golden flower (diploid) 2	36.306
	CNS0095603	Golden flower (diploid) 3	34.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.688
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.607
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.323
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.507
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.399
	CNS0095610	Silvery flower (tetraploid) 1	61.015
	CNS0095611	Silvery flower (tetraploid) 2	45.005
	CNS0095612	Silvery flower (tetraploid) 3	47.498
	CNS0095613	Golden flower (tetraploid) 1	25.924
	CNS0095614	Golden flower (tetraploid) 2	36.079
	CNS0095615	Golden flower (tetraploid) 3	15.749
CRA001975	CRR073297	Stem 1	49.273
	CRR073298	Stem 2	48.526
	CRR073299	Stem 3	49.053
	CRR073300	Leaf 1	58.543
	CRR073301	Leaf 2	51.157
	CRR073302	Leaf 3	48.164
	CRR073303	Juvenile bud 1	56.162
	CRR073304	Juvenile bud 2	37.675
	CRR073305	Juvenile bud 3	47.165
	CRR073306	Third green 1	17.367
	CRR073307	Third green 2	13.189
	CRR073308	Third green 3	18.896
	CRR073309	Second white 1	15.620
	CRR073310	Second white 2	20.142
	CRR073311	Second white 3	16.143
	CRR073312	Silver flowering 1	12.449
	CRR073313	Silver flowering 2	11.001
	CRR073314	Silver flowering 3	9.219
	CRR073315	Gold flowering 1	21.729
	CRR073316	Gold flowering 2	33.485
	CRR073317	Gold flowering 3	18.858
	CRR073318	Tawny withering 1	41.412
	CRR073319	Tawny withering 2	42.509
	CRR073320	Tawny withering 3	51.369