Detail information of GWHGAAZE013592


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011086506.15.60078E-77PREDICTED: protein LSM12 homolog A [Sesamum indicum]
trEMBLtr|W9RCY8|W9RCY8_9ROSA2E-75Uncharacterized protein {ECO:0000313|EMBL:EXB82642.1}
TAIR10AT1G24050.12E-33RNA-processing, Lsm domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene104969146104971916-
GWHAAZE00000003mRNA104969146104971916-
GWHAAZE00000003exon104971756104971916-
GWHAAZE00000003exon104971522104971602-
GWHAAZE00000003exon104969306104969429-
GWHAAZE00000003exon104969146104969193-
GWHAAZE00000003CDS104971756104971916-
GWHAAZE00000003CDS104971522104971602-
GWHAAZE00000003CDS104969306104969429-
GWHAAZE00000003CDS104969146104969193-
Transcript Sequence

Network for GWHGAAZE013592

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09793.10AD401226.20E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K23643LSM12 Circadian rhythm - fly map04711

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.842
SRR3591706second leaf36.513
SRR3591707mature leaf32.000
SRR3591708Shoot apex52.680
SRR3591709Stem48.312
SRR3591710White floral bud85.223
SRR3591711White flower100.598
SRR3591712Green floral bud70.261
SRR3591713Yellow flower94.657
SRP173429 SRR8316895Juvenile bud stage 58.191
SRR8316896Juvenile bud stage 94.183
SRR8316897Juvenile bud stage 37.737
SRR8316894Third green stage 31.788
SRR8316900Third green stage 89.691
SRR8316901Third green stage 94.384
SRR8316898Complete white stage 55.698
SRR8316899Complete white stage 120.237
SRR8316903Complete white stage 84.957
SRR8316902Silver flowering stage55.015
SRR8316904Silver flowering stage66.993
SRR8316905Silver flowering stage36.058
SRR8316906Gold flowering stage 106.461
SRR8316907Gold flowering stage 124.132
SRR8316908Gold flowering stage 110.854
SRP132670SRR6706286Control61.033
SRR6706287Light intensity 50%62.636
SRR6706288Light intensity 20%69.660
CNP0000432CNS0095592Slightly white alabastrum(diploid) 190.024
CNS0095593Slightly white alabastrum(diploid) 296.315
CNS0095594Slightly white alabastrum(diploid) 382.670
CNS0095595Whole white alabastrum(diploid) 266.008
CNS0095596Whole white alabastrum(diploid) 369.793
CNS0095597Whole white alabastrum(diploid) 455.455
CNS0095598Silvery flower (diploied) 183.773
CNS0095599Silvery flower (diploied) 273.458
CNS0095600Silvery flower (diploied) 391.789
CNS0095601Golden flower (diploid) 174.062
CNS0095602Golden flower (diploid) 281.733
CNS0095603Golden flower (diploid) 381.355
CNS0095604Slightly white alabastrum(tetraploid) 179.258
CNS0095605Slightly white alabastrum(tetraploid) 273.176
CNS0095606Slightly white alabastrum(tetraploid) 395.991
CNS0095607Whole white alabastrum(tetraploid) 148.241
CNS0095608Whole white alabastrum(tetraploid) 246.285
CNS0095609Whole white alabastrum(tetraploid) 368.498
CNS0095610Silvery flower (tetraploid) 191.357
CNS0095611Silvery flower (tetraploid) 277.037
CNS0095612Silvery flower (tetraploid) 381.120
CNS0095613Golden flower (tetraploid) 173.850
CNS0095614Golden flower (tetraploid) 270.838
CNS0095615Golden flower (tetraploid) 377.041
CRA001975CRR073297Stem 192.151
CRR073298Stem 280.353
CRR073299Stem 3100.229
CRR073300Leaf 192.430
CRR073301Leaf 290.893
CRR073302Leaf 3107.021
CRR073303Juvenile bud 199.056
CRR073304Juvenile bud 296.031
CRR073305Juvenile bud 395.380
CRR073306Third green 196.240
CRR073307Third green 2110.375
CRR073308Third green 3106.015
CRR073309Second white 189.678
CRR073310Second white 290.160
CRR073311Second white 368.876
CRR073312Silver flowering 170.798
CRR073313Silver flowering 277.396
CRR073314Silver flowering 373.216
CRR073315Gold flowering 166.428
CRR073316Gold flowering 253.623
CRR073317Gold flowering 342.707
CRR073318Tawny withering 190.411
CRR073319Tawny withering 2100.990
CRR073320Tawny withering 384.000