Gene detail

Detail information of GWHGAAZE013585

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266446.2	PREDICTED: DNA polymerase lambda isoform X1 [Vitis vinifera]
trEMBL	tr\|D7TNM4\|D7TNM4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32097.3}
TAIR10	AT1G10520.1	DNA polymerase lambda (POLL)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104872387	104881608	+
GWHAAZE00000003	mRNA	104872387	104881608	+
GWHAAZE00000003	exon	104872387	104872497	+
GWHAAZE00000003	exon	104872590	104872736	+
GWHAAZE00000003	exon	104877598	104877903	+
GWHAAZE00000003	exon	104878059	104878152	+
GWHAAZE00000003	exon	104878259	104878389	+
GWHAAZE00000003	exon	104878549	104878611	+
GWHAAZE00000003	exon	104879131	104879310	+
GWHAAZE00000003	exon	104879406	104879459	+
GWHAAZE00000003	exon	104879555	104879643	+
GWHAAZE00000003	exon	104880153	104880243	+
GWHAAZE00000003	exon	104880390	104880470	+
GWHAAZE00000003	exon	104880882	104880949	+
GWHAAZE00000003	exon	104881143	104881227	+
GWHAAZE00000003	exon	104881336	104881608	+
GWHAAZE00000003	CDS	104872387	104872497	+
GWHAAZE00000003	CDS	104872590	104872736	+
GWHAAZE00000003	CDS	104877598	104877903	+
GWHAAZE00000003	CDS	104878059	104878152	+
GWHAAZE00000003	CDS	104878259	104878389	+
GWHAAZE00000003	CDS	104878549	104878611	+
GWHAAZE00000003	CDS	104879131	104879310	+
GWHAAZE00000003	CDS	104879406	104879459	+
GWHAAZE00000003	CDS	104879555	104879643	+
GWHAAZE00000003	CDS	104880153	104880243	+
GWHAAZE00000003	CDS	104880390	104880470	+
GWHAAZE00000003	CDS	104880882	104880949	+
GWHAAZE00000003	CDS	104881143	104881227	+
GWHAAZE00000003	CDS	104881336	104881434	+
GWHAAZE00000003	three_prime_UTR	104881435	104881608	+

Transcript Sequence
>GWHTAAZE013599 ATGGCGCCAAATTCGAGCAAGAAAAAATCACCACCGTCCGATCCTGAGGGAATTTTTGCCGGTATGGTTGTCTTCTTAGTTGAAAACGGCGTCCAGAGTCGCCGTTTACAGAAGATATGGAAGCAGAAATTGGTGCAAATGGGGGCAATTATCGAGGACCGCATGTCTAAAAGGATAACTCATGTTTTCGCCATAAATTCAGATTCCCTTCACCTCCTCCAACAACTTGTTCCCCAACGATTATCCCGCTTTAAAGGAAATGTTCTCCTTTATCACTGGTTAGAGGAAAGCTTGAGATTAGGACAAAAAGTATCTGAAGATTCATACATCCTAAAGCTGGATTCAGGAGGAGGTGGAGATACCCCAAATATGAACCACACCAATGGCGAAGAACCTTCCCATCCCAAAAAGATTAAAATGTCTTCTAATGACTCCGCAAATGCAAGTCCAGAAAGCAGGGAAAAGACATCAAGTGGCGATGTATCACAGGCACTGAATACTGCAAGCGGCTCTTATGACTCGTCCATTAACAGTCCAATAATCAGTGATGCTCAAATTGAAACTGTCTGTACAGCAGATCCATCCTCGCAATATAGCCCTCCTGATTTGAACAGGAACATTACTGAAATATTTGGAAAGCTTATCAACATATATAGAGCACTGGGTGATGATAGGAGGTCTTTTAGCTATTATAAGGCTATCCCGGTTATTGAAAAGTTGCCGTTCAAAATTGAAAGTGTGGATCAGGTCAAACACCTACCAACAATTGGAAAGTCAATGCAGGATCATATTCATGAGATAGTGACTACTGGGAAGCTATCCAAGTTGGAGCACTTCGAGACTGATGAAAAGGTAAGGACAATTAGTTTATTTGGGGAAGTATGGGGAATTGGTCCAGCCACTGCACAGAAACTTTACGATAAAGGACACCGAATTCTAGATGACTTGAAGAATGAGGATTCATTGACCAATGCACAGAGGTTAGGGTTGAAATACTTTGATGATATCAAAACAAGGATCCCACGTAATGAGGTTCAAGAAATGGAGCTGCTTTTGCAGAAAGCTGGAGAAGATATTTTGCCTGGTATAGAGATTGTATGTGGAGGATCGTTCAGACGAGGAAAAGCATCATGCGGGGATATGGACATTGTAATTACACATCCTGATGGGAAAAGTCACATAGGCTTTCTACCAAAGTATGTAAGGCATCTGAAAGAAATGCAGTTTCTAAGAGAAGATTTAGTTTTCACTATTCACAGTGAAGAGGGTACTGATTCAGGGGTTGACACATACTTTGGTCTTTGCACGTATCCTGGTCGAGAGTTGCGGTATCGCATTGATCTCAAGGTATATCCGAGGGATATATATGCATTTGGACTAATTCATTGGACAGGAAATGACGTATTAAACAGGAGGCTGAGGTTACTAGCAGAATCGAAGGGATTCCGACTTGACGATACAGGGCTTTTTCCTGCTACTAAGGGTTCAAGCGGTAAACGGGGGGTGAGAGGTATGGCGAGTTTGAAGTTTGAGACAGAAAAGGAGGTGTTTGAATTCCTTGGTTTTCCTTGGTTTGAACCCAATCAAAGGAATCTGTGACAGACCTGACCTGAGTTCAGTGGCTTTTCTTAAACTTTGTACATAAAAGGGTTTTAGTTCTAGCAGAGCCAACATATGCTGGTGTTGTAAATTAGCATAAATTAAGAAGTAGTTTGCTATTGTCAAGACTTGCCATTATGCCTTTTTTAGTCTGACTTTGATCCGTGCGACTTG

Network for GWHGAAZE013585

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14716.7	HHH_8	204	269	1.20E-13
PF10391.10	DNA_pol_lambd_f	290	336	1.80E-17
PF14792.7	DNA_pol_B_palm	339	452	7.50E-28
PF14791.7	DNA_pol_B_thumb	460	531	1.40E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03512	POLL	Base excision repair	map03410
K03512	POLL	Non-homologous end-joining	map03450

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0034061	molecular_function	DNA polymerase activity
GO:0003887	molecular_function	DNA-directed DNA polymerase activity
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.080
	SRR3591706	second leaf	13.974
	SRR3591707	mature leaf	10.848
	SRR3591708	Shoot apex	18.456
	SRR3591709	Stem	10.014
	SRR3591710	White floral bud	12.186
	SRR3591711	White flower	13.152
	SRR3591712	Green floral bud	8.004
	SRR3591713	Yellow flower	14.489
SRP173429	SRR8316895	Juvenile bud stage	6.535
	SRR8316896	Juvenile bud stage	9.742
	SRR8316897	Juvenile bud stage	4.265
	SRR8316894	Third green stage	3.020
	SRR8316900	Third green stage	5.750
	SRR8316901	Third green stage	7.445
	SRR8316898	Complete white stage	3.354
	SRR8316899	Complete white stage	8.712
	SRR8316903	Complete white stage	6.520
	SRR8316902	Silver flowering stage	5.833
	SRR8316904	Silver flowering stage	7.704
	SRR8316905	Silver flowering stage	3.405
	SRR8316906	Gold flowering stage	11.483
	SRR8316907	Gold flowering stage	10.699
	SRR8316908	Gold flowering stage	14.672
SRP132670	SRR6706286	Control	3.473
	SRR6706287	Light intensity 50%	4.057
	SRR6706288	Light intensity 20%	3.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.296
	CNS0095593	Slightly white alabastrum(diploid) 2	8.046
	CNS0095594	Slightly white alabastrum(diploid) 3	7.519
	CNS0095595	Whole white alabastrum(diploid) 2	7.304
	CNS0095596	Whole white alabastrum(diploid) 3	4.733
	CNS0095597	Whole white alabastrum(diploid) 4	4.768
	CNS0095598	Silvery flower (diploied) 1	11.441
	CNS0095599	Silvery flower (diploied) 2	8.352
	CNS0095600	Silvery flower (diploied) 3	4.123
	CNS0095601	Golden flower (diploid) 1	6.932
	CNS0095602	Golden flower (diploid) 2	4.676
	CNS0095603	Golden flower (diploid) 3	5.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.219
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.204
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.306
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.830
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.701
	CNS0095610	Silvery flower (tetraploid) 1	12.973
	CNS0095611	Silvery flower (tetraploid) 2	11.796
	CNS0095612	Silvery flower (tetraploid) 3	16.179
	CNS0095613	Golden flower (tetraploid) 1	9.687
	CNS0095614	Golden flower (tetraploid) 2	11.591
	CNS0095615	Golden flower (tetraploid) 3	11.017
CRA001975	CRR073297	Stem 1	4.764
	CRR073298	Stem 2	4.074
	CRR073299	Stem 3	1.412
	CRR073300	Leaf 1	3.527
	CRR073301	Leaf 2	3.074
	CRR073302	Leaf 3	1.535
	CRR073303	Juvenile bud 1	1.512
	CRR073304	Juvenile bud 2	0.665
	CRR073305	Juvenile bud 3	1.830
	CRR073306	Third green 1	0.331
	CRR073307	Third green 2	0.257
	CRR073308	Third green 3	0.449
	CRR073309	Second white 1	0.478
	CRR073310	Second white 2	0.729
	CRR073311	Second white 3	0.536
	CRR073312	Silver flowering 1	0.347
	CRR073313	Silver flowering 2	1.187
	CRR073314	Silver flowering 3	0.743
	CRR073315	Gold flowering 1	0.749
	CRR073316	Gold flowering 2	1.653
	CRR073317	Gold flowering 3	0.738
	CRR073318	Tawny withering 1	1.878
	CRR073319	Tawny withering 2	2.854
	CRR073320	Tawny withering 3	1.885