Gene detail

Detail information of GWHGAAZE013573

Functional Annotation

Database	Orthologs	Annotation
Nr	NP_001280746.1	paired amphipathic helix protein Sin3-like 4 [Malus domestica]
Swissprot	tr\|O04539\|SNL4_ARATH	Paired amphipathic helix protein Sin3-like 4
trEMBL	tr\|D9ZJF7\|D9ZJF7_MALDO	WRKY domain class transcription factor {ECO:0000313\|EMBL:ADL36860.1}
TAIR10	AT1G70060.1	SIN3-like 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104614540	104624660	+
GWHAAZE00000003	mRNA	104614540	104624660	+
GWHAAZE00000003	exon	104614540	104614694	+
GWHAAZE00000003	exon	104614792	104614966	+
GWHAAZE00000003	exon	104615050	104615153	+
GWHAAZE00000003	exon	104615221	104615443	+
GWHAAZE00000003	exon	104615526	104615618	+
GWHAAZE00000003	exon	104615719	104615857	+
GWHAAZE00000003	exon	104615956	104616039	+
GWHAAZE00000003	exon	104616766	104616902	+
GWHAAZE00000003	exon	104618281	104618532	+
GWHAAZE00000003	exon	104618623	104618777	+
GWHAAZE00000003	exon	104618921	104619048	+
GWHAAZE00000003	exon	104619136	104619406	+
GWHAAZE00000003	exon	104619548	104619627	+
GWHAAZE00000003	exon	104621005	104621583	+
GWHAAZE00000003	exon	104621802	104621893	+
GWHAAZE00000003	exon	104622039	104622063	+
GWHAAZE00000003	exon	104622164	104622732	+
GWHAAZE00000003	exon	104623106	104623267	+
GWHAAZE00000003	exon	104623726	104623878	+
GWHAAZE00000003	exon	104624029	104624183	+
GWHAAZE00000003	exon	104624540	104624660	+
GWHAAZE00000003	CDS	104614540	104614694	+
GWHAAZE00000003	CDS	104614792	104614966	+
GWHAAZE00000003	CDS	104615050	104615153	+
GWHAAZE00000003	CDS	104615221	104615443	+
GWHAAZE00000003	CDS	104615526	104615618	+
GWHAAZE00000003	CDS	104615719	104615857	+
GWHAAZE00000003	CDS	104615956	104616039	+
GWHAAZE00000003	CDS	104616766	104616902	+
GWHAAZE00000003	CDS	104618281	104618532	+
GWHAAZE00000003	CDS	104618623	104618777	+
GWHAAZE00000003	CDS	104618921	104619048	+
GWHAAZE00000003	CDS	104619136	104619406	+
GWHAAZE00000003	CDS	104619548	104619627	+
GWHAAZE00000003	CDS	104621005	104621583	+
GWHAAZE00000003	CDS	104621802	104621893	+
GWHAAZE00000003	CDS	104622039	104622063	+
GWHAAZE00000003	CDS	104622164	104622732	+
GWHAAZE00000003	CDS	104623106	104623267	+
GWHAAZE00000003	CDS	104623726	104623878	+
GWHAAZE00000003	CDS	104624029	104624183	+
GWHAAZE00000003	CDS	104624540	104624660	+

Transcript Sequence
>GWHTAAZE013587 TCTAGGCAAAACCAGATGATGGGTGGAGGTAGTACACAAAAACTAACAACAAATGATGCCCTTTCATATCTGAAAGCAGTGAAGGACATATTTCAGGACAACCGGGGAAAATATAACGAGTTCCTTGAAGTCATGAAAGATTTCAAGGCTCAAAGCATTGACACGGCTGGTGTCATAGCAAGGGTGAAGGAATTATTTAAAGGTCATAGAGACCTAATTTTGGGTTTCAATACCTTTTTGCCCAAGGGATATGAGATCACCCTGGAAGAACTACCTGTTAAGAAGCCGGTTGACTTTGATGAAGCCATCAACTTTGTAAACAAAATTAAGATGAGGTTTCAAGGCGACGATCATGTTTACAAATCTTTTCTTGAGATTTTGAATATGTATAGAAGGGAAAGCAAAACCATCACCGAGGTCTACGATGAGGTAGGGGCACCGGATGTATTTCTTACTTTCGGCAACTTATGCCTATTTCAGGTTATTGATCTTTTCCATGACCACAATGACCTTCTAGTGGAGTTCGGTCATTTTTTACCTGATACTTCCAGCACAGCCTCTCTTCGTTATGCTCCTCTTGGTAAGATTCCTATCCCCCGTCGTGATGATAGGAGCTCCCCCATGACAACAATAAGGCCAATACAAGTTGAAAAGGTGAAGCCTACTGCCTCATATGCTGACCGTGGTTTTGGTGTTGATCGACCCGAACCAGACCATGATAAACCTCCAATTAGATCTGACAAAGATAAGCATATGCCCCACAAACGAAAATCTGATTTTAGGGTTGATGATTCTGTTGCTGACCAAACTGACAAAGGTGTGGAAGGTGCTAAAAACTTTGAATTCCATTCTATTTCATCTTCTAATGATCATAAAAGAGCCTTTAAAAGATCTCATTTACAGTTTATACTCAGTAAACTTATGGAGCCTGTACTCATTTTGCATGGAGTGTTTATCCAATTTCCCATGTTCGGTACATACAAAATGGAATCTTCTTTCTATGATAAAGTAAGGGAGAGATTAAGTAATCCAGCTGATTACCAGGAATTTACCAATTGTATTAATAGCTACAAAAGAGGCCATATTACGCAATCACAATTGCAATCTGTGCTGGATTTTAATTTTTTGACAGGATCCTTGTGGAATGAAGGGCGTTCACCTAGATCAATAAAGGTAGAGGATCGGGATAGAGAACATGATCGTGAAAATAGCAAAAGTGTAGCCTTGGGCAGTAAAGAGGTTGTAGGACAGAAGATGCCTTTGTATTTTAGCAAGGATAAGTATATGACAAAACCCATTCAAGAACTTGATCTCTCTAACTGTGACAGCTGCACTCCCAGTTATCGACTACTGCCGAAGAACTACTTAATTCCTTCAGCAAGCCAGAGAACAGAGATCGGTGCTCAAGTATTGAATGATCACTGGGTTTCCGTCACGTCGGGAAGTGAGGATTACTCTTTTAAACACATGCGCAAAAACCAGTATGAGGAAAGTTTGTTTCGATGTGAAGATGACAGGTTTGAACTCGACATGTTGTTAGAATCTGTGAATGCAACAACTAAACGCGTAGAAGAACTGTTAGACAAAATGAATCGTAGTGCAATCAAAACAGACAATCCAATTCATATTGAAGACCATTTTACAGCTCTGAACCTAAGGTGTATTGAACGTTTATATGGTGACCATGGGCTTGACGTGATGGATGTATTAAGGAAGAATGCACCTCTTGCTCTGCCAGTTATATTAACCCGCTTGAAGCAGAAACAAGAGGAGTGGGCGAGGTGTCGTTCTGATTTTAATAAAGTTTGGGCTGAAATCTATGCTAAGAATCATCACAAATCACTTGATCACCGCAGTTTCTATTTCAAGCAGCAGGATTCAAAGAGCTTGAGCACTAAAGGTAAATTTAATACTCGGGCAACTCTTGAAGATCAGAACATGGGTCCAAGTCCTACAAATACTTGTGCTGTGAACATTTACGGATTTACTCCTTTTAAAGTCAGCAAATTTTCACTTGCCCAATATCTCCTCTGTAGTTATTATTGCACAGCTCAAGTTAGATATACATCTTTAGTTAACAAAAAACCTGTGCTTAATTCAGCATTATTGACCGAGATCAAAGAGATCAGTGAAGAGAAGAGCAAAGAGGATGATATGCTGGAAGCATTTACTGGTGGAAATAGACGACCCATCATTCCAGATTTGGTGTATGAGTATCCTGATTCAGATATCCATGAAGACGTATATCAGCTCATCAAGTTTTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGACAAAGTTATGAAGATTTGGACAACCTTCCTAGAACCGATGCTTGGCATTCCTTCTCGATCTTTGAGCATTGGACATAGTGATCTGAGTCCAGTTGATAAGGGGGTTAAAGAAGATGGTTCTCATAATGCAGATGAAAGTGCGTCTAAGAATGATACTTTGTGTAATGCTCCTCAACATGGAAACGTGCAGATTAATGTCACCGGGGCCAATCAAAATACATCAGTTACTGCTGGACCAGAGGAAAGTAATGGAATAGTCAACCAGGAAAATACACCAGGGGTTTGTGCAACTCCTTTGAGACCTGGAAATGCCTTGGTTGAGAGTGGACTTCAGAGAAGGCCCGTTAATGAACTATTACCTTCATCAGAGCCAGCAACGGTACCTTATGGCTTTGCTTTTGCGCAATCTTATTTGATGTTACAGGCTGATGGTTCTAAATTACCAGCTTCGTCCACAAATGTGGTAACAGCAGAGGGAATCAGAGCTCAGGGGTCTCTTGAAGAATCTGCTGGGCACTTCAATGTAGAAAGGGAGGAGGGCGAATTATCTCCAAATGGAGATTTTGAGGATAATTTTGAGGCACTTGCAGCTTCTGGTACTGAGGCCAGTAATAAACCAAATGATGTTGATGCTGATGATGAAGGTGAAGGTGAAGGTGAGGAAAGTTCTCATAGGTCATCAGATGAAACTGAGAATAATGCTTTGGGAAGTGAGTCCGGTGATGGAGAAGATGAAGATGAGAATGAAAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGTGCAACAGCTGATGCTCATGATGTAGAAGGGAGTGGAACGCTTTTGCCTTACTCAGAATGTTTCTTACAAACAACGAAGCCTCTTGCAAAGCATGTTCCTCCTCTGTTGCTGCATGACCAGGAGAAGGATTCTCGGGTTTTTTATGCAAACGATTCATTTTATGTCCTTTTTAGGCTTCATCAAACACTTTATGATAGAATAAGATCAGCAAAGAATTCATTTGCTGAAAATAAGTGGCGGAGGTCAAATGATACAACATCAAGTGACATGTATGCCAGGTGGTTTATCTTTTCGAGATTTGTTTTCAACTATAAATTCTACGTCATCAACTTCTATATTAACTTGCTACAAACAATTGCAGGTGATGAGATTGATAACAAACTTCTGCAACTACATGAGTATGAAAAATCAAGAAAACGTTGGAGATTTGTTGATGTATCCTATCATGCGAATGCCCATGTCATCCTTCATGATGAGAACATCTACCGTATCGAATGCTCATCTGAACCAACCTGTTTGACGTTACTGCTTATGGACTATGGGGATGATAAGCCTGAAGCTGTTTCTATGGAGCCAGATTTTGCAGTTTATCTCAACGATGACTTGCTCTCACTTGTTCCTGAAGAACATAACCCGGAAATCTTCTTGAGGAGAAATAAACGAAAATATGCGCTTGGAGATGAAATTTCAGCAGCATGTCAAGCAATGGAGGGCCTTATAGTTATTAACGGTCTGGAGTGTAAGATCACTTGCAGTTCATCCAAGGTAGCGTGA

Network for GWHGAAZE013573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02671.22	PAH	37	80	1.20E-16
PF02671.22	PAH	118	179	3.80E-13
PF08295.13	Sin3_corepress	443	533	2.70E-35
PF16879.6	Sin3a_C	1073	1113	6.40E-07
PF16879.6	Sin3a_C	1139	1282	6.40E-16

Protein Sequence

>GWHPAAZE013580
SRQNQMMGGGSTQKLTTNDALSYLKAVKDIFQDNRGKYNEFLEVMKDFKAQSIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLEELPVKKPVDFDEAINFVNKIKMRFQGDDHVYKSFLEILNMYRRESKTITEVYDEVGAPDVFLTFGNLCLFQVIDLFHDHNDLLVEFGHFLPDTSSTASLRYAPLGKIPIPRRDDRSSPMTTIRPIQVEKVKPTASYADRGFGVDRPEPDHDKPPIRSDKDKHMPHKRKSDFRVDDSVADQTDKGVEGAKNFEFHSISSSNDHKRAFKRSHLQFILSKLMEPVLILHGVFIQFPMFGTYKMESSFYDKVRERLSNPADYQEFTNCINSYKRGHITQSQLQSVLDFNFLTGSLWNEGRSPRSIKVEDRDREHDRENSKSVALGSKEVVGQKMPLYFSKDKYMTKPIQELDLSNCDSCTPSYRLLPKNYLIPSASQRTEIGAQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLDKMNRSAIKTDNPIHIEDHFTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRSDFNKVWAEIYAKNHHKSLDHRSFYFKQQDSKSLSTKGKFNTRATLEDQNMGPSPTNTCAVNIYGFTPFKVSKFSLAQYLLCSYYCTAQVRYTSLVNKKPVLNSALLTEIKEISEEKSKEDDMLEAFTGGNRRPIIPDLVYEYPDSDIHEDVYQLIKFSCGEVCTTEQLDKVMKIWTTFLEPMLGIPSRSLSIGHSDLSPVDKGVKEDGSHNADESASKNDTLCNAPQHGNVQINVTGANQNTSVTAGPEESNGIVNQENTPGVCATPLRPGNALVESGLQRRPVNELLPSSEPATVPYGFAFAQSYLMLQADGSKLPASSTNVVTAEGIRAQGSLEESAGHFNVEREEGELSPNGDFEDNFEALAASGTEASNKPNDVDADDEGEGEGEESSHRSSDETENNALGSESGDGEDEDENENKAESEGEAEGATADAHDVEGSGTLLPYSECFLQTTKPLAKHVPPLLLHDQEKDSRVFYANDSFYVLFRLHQTLYDRIRSAKNSFAENKWRRSNDTTSSDMYARWFIFSRFVFNYKFYVINFYINLLQTIAGDEIDNKLLQLHEYEKSRKRWRFVDVSYHANAHVILHDENIYRIECSSEPTCLTLLLMDYGDDKPEAVSMEPDFAVYLNDDLLSLVPEEHNPEIFLRRNKRKYALGDEISAACQAMEGLIVINGLECKITCSSSKVA

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K11644	SIN3A	Mitophagy - yeast	map04139
K11644	SIN3A	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.166
	SRR3591706	second leaf	14.193
	SRR3591707	mature leaf	15.208
	SRR3591708	Shoot apex	18.658
	SRR3591709	Stem	15.747
	SRR3591710	White floral bud	11.263
	SRR3591711	White flower	12.357
	SRR3591712	Green floral bud	18.312
	SRR3591713	Yellow flower	8.466
SRP173429	SRR8316895	Juvenile bud stage	13.567
	SRR8316896	Juvenile bud stage	18.248
	SRR8316897	Juvenile bud stage	8.590
	SRR8316894	Third green stage	7.825
	SRR8316900	Third green stage	16.135
	SRR8316901	Third green stage	13.091
	SRR8316898	Complete white stage	1.975
	SRR8316899	Complete white stage	10.434
	SRR8316903	Complete white stage	6.183
	SRR8316902	Silver flowering stage	1.815
	SRR8316904	Silver flowering stage	4.324
	SRR8316905	Silver flowering stage	1.558
	SRR8316906	Gold flowering stage	3.719
	SRR8316907	Gold flowering stage	4.518
	SRR8316908	Gold flowering stage	4.270
SRP132670	SRR6706286	Control	7.435
	SRR6706287	Light intensity 50%	8.259
	SRR6706288	Light intensity 20%	8.683
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.725
	CNS0095593	Slightly white alabastrum(diploid) 2	7.987
	CNS0095594	Slightly white alabastrum(diploid) 3	10.093
	CNS0095595	Whole white alabastrum(diploid) 2	9.615
	CNS0095596	Whole white alabastrum(diploid) 3	9.417
	CNS0095597	Whole white alabastrum(diploid) 4	9.400
	CNS0095598	Silvery flower (diploied) 1	10.809
	CNS0095599	Silvery flower (diploied) 2	9.526
	CNS0095600	Silvery flower (diploied) 3	8.431
	CNS0095601	Golden flower (diploid) 1	9.380
	CNS0095602	Golden flower (diploid) 2	10.117
	CNS0095603	Golden flower (diploid) 3	10.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.335
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.873
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.069
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.573
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.903
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.776
	CNS0095610	Silvery flower (tetraploid) 1	8.531
	CNS0095611	Silvery flower (tetraploid) 2	9.763
	CNS0095612	Silvery flower (tetraploid) 3	6.811
	CNS0095613	Golden flower (tetraploid) 1	3.255
	CNS0095614	Golden flower (tetraploid) 2	7.255
	CNS0095615	Golden flower (tetraploid) 3	3.407
CRA001975	CRR073297	Stem 1	13.124
	CRR073298	Stem 2	10.659
	CRR073299	Stem 3	8.187
	CRR073300	Leaf 1	11.526
	CRR073301	Leaf 2	8.085
	CRR073302	Leaf 3	5.821
	CRR073303	Juvenile bud 1	5.899
	CRR073304	Juvenile bud 2	3.336
	CRR073305	Juvenile bud 3	6.173
	CRR073306	Third green 1	0.630
	CRR073307	Third green 2	0.558
	CRR073308	Third green 3	0.912
	CRR073309	Second white 1	0.309
	CRR073310	Second white 2	1.449
	CRR073311	Second white 3	0.635
	CRR073312	Silver flowering 1	0.340
	CRR073313	Silver flowering 2	0.754
	CRR073314	Silver flowering 3	0.798
	CRR073315	Gold flowering 1	2.524
	CRR073316	Gold flowering 2	6.088
	CRR073317	Gold flowering 3	1.535
	CRR073318	Tawny withering 1	3.825
	CRR073319	Tawny withering 2	4.164
	CRR073320	Tawny withering 3	4.572