Gene detail

Detail information of GWHGAAZE013571

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009602624.1	PREDICTED: probable inactive receptor kinase At1g27190 [Nicotiana tomentosiformis]
Swissprot	tr\|O04567\|Y1719_ARATH	Probable inactive receptor kinase At1g27190 (Precursor)
trEMBL	tr\|A0A067JEU5\|A0A067JEU5_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP21268.1}
TAIR10	AT1G27190.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104568560	104570386	-
GWHAAZE00000003	mRNA	104568560	104570386	-
GWHAAZE00000003	exon	104568560	104570386	-
GWHAAZE00000003	CDS	104568560	104570386	-

Transcript Sequence
>GWHTAAZE013585 ATGAAATTTAAAACCAACCCCTTCTTCAATCTCACTTCAATCCTCATTATCATCCTCACTACCACATCCACCGCCATTGAAGACGACGTCAAATGCCTTGAAGGAGTAAAAACCTCTCTTACCGATCCACAGAGCAAGCTCACATGGACATTCACCAACACCTCCGTCGCCTTTATCTGCAAGCTCGTCGGCGTATCTTGCTGGAACGAGAAGGAGAATCGCCTCATCAGCCTCCAACTCCCCACCATGAGCCTCGCCGGCCGGTTACCGGACTCTCTCCAGTTCTGCCGGAGTCTCCAGAACCTCGATCTCTCCGGTAACTCCCTCTCTGGTCCTATCCCTCCCCAAATCTGTACTTGGTTGCCTTATTTAGTAACCCTAGATCTCTCCGGTAATCGTCTCTCCGGTTCTATCCCTATAGAAATGGTGAATTGCAAGTTTTTAAACACCCTTATTTTGAGTAACAATATGTTGTCCGGTTCTATTCCATTCGAGCTCGGCCGGCTCGATCGGCTTAAGAGATTGTCTGTTGCTGATAATGATCTCTCTGGCTCTGTTCCCTCTGATTTATCGAAATTTGAGGTTGGTGACTTTGGAGGCAATAATGGACTGTGTGGTAAGCCACTTGGATCCAAATGCGGGCGTTTGAGCAACAAAAGTCTTGCGATTATTATAGCTGCTGGTGTGGTTGGTGCTGCCGGTTCTTTGCTTCTCGGTTATGCGCTTTGGTGGTGGTTTTTCGTGTATGCAAATAGGAAGAAGAAGAGAGAGTTTGTTGGTGAGAAAGATCAGAGTAGTTGGGTTGAGAGATTGAGGGCTCATAGACTTGTTCAGGTGACATTGTTTCAGAAACCAATTGTCAAAATCAGGTTGAGTGATATAATGGTGGCCACTAACAATTTCGATCATGACAACATTGTTATTACAACAAGAACAGGGGTTTCATACAAGGCAACGTTGGCGGATGGCTCGCAATTGGCAATAAAGCGTTTGAGTGCTTGTAAGCTTAGTGAGAAGCAGTTCCGATCTGAGATGAATAGGCTAGGGCAGCTTAGACACCCCAATTTGGTGCCGTTATTGGGGTATTGTGTGGTGGAAGATGAGAGGCTTTTGGTTTATAAGCTTATGCCTAATGGGAGCTTGTATTCACTTTTGTATGGGAGTGTAACTCCTGCTAGCTATGGTGAATTGCTGGATTGGCCTTCGAGGCTTAGGATTGGTATTGGTGCTGCTAGGGGGCTTGCTTGGCTTCACCACGGGTGTCAACCCCCCTACATTCACCAAAATTTAAGCTCGAATATCATTCTCATTGATGATGATTTTGATCCTCGGATAACGGATTTTGGGTTGGCGAGGCTTGTGGGTTCTATTGACTCCGGTGATAGCTCTTTTGTTAATGGTGACTTGGGCGAGTTTGGTTATGTTGCTCCTGAGTATTCAAGCACTATGGTTGCTTCACAGAAAGGGGATGTTTATGCATTTGGAGTAGTGCTTTTAGAGTTGGTGACTGGACAGAAGCCTCTTGAAGTGAATAATGCTGGGGAAGTATTTAAAGGACATTTGGTGGATTGGGTCAATCAGCTTTTGGGGTCTGGTCGAAGCAGGGATATCATTGATAAAGCTCTATATGGACTAGGGCATGATGATGAAATGTTGCAGTTCCTTAGGGTCGCTTGTACGTGTGTGGTTTCTAGGCCTAAGGATAGACCTTCTATGTATCATGTTTACCAGTCTTTGAAGAGCATGGCTGAGGAACACAGTTTCTGTGAACAGTTTGATGATTTTCCATTGAACTTTGGCAAACAAGATCATGATCATCGGGATTAG

Network for GWHGAAZE013571

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	322	515	1.50E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.125
	SRR3591706	second leaf	4.556
	SRR3591707	mature leaf	2.675
	SRR3591708	Shoot apex	25.201
	SRR3591709	Stem	7.151
	SRR3591710	White floral bud	11.180
	SRR3591711	White flower	8.098
	SRR3591712	Green floral bud	8.859
	SRR3591713	Yellow flower	1.331
SRP173429	SRR8316895	Juvenile bud stage	11.820
	SRR8316896	Juvenile bud stage	10.838
	SRR8316897	Juvenile bud stage	6.644
	SRR8316894	Third green stage	5.958
	SRR8316900	Third green stage	13.583
	SRR8316901	Third green stage	14.261
	SRR8316898	Complete white stage	5.480
	SRR8316899	Complete white stage	21.298
	SRR8316903	Complete white stage	11.670
	SRR8316902	Silver flowering stage	3.222
	SRR8316904	Silver flowering stage	5.329
	SRR8316905	Silver flowering stage	2.587
	SRR8316906	Gold flowering stage	6.104
	SRR8316907	Gold flowering stage	5.866
	SRR8316908	Gold flowering stage	9.534
SRP132670	SRR6706286	Control	16.946
	SRR6706287	Light intensity 50%	16.570
	SRR6706288	Light intensity 20%	15.749
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.853
	CNS0095593	Slightly white alabastrum(diploid) 2	11.631
	CNS0095594	Slightly white alabastrum(diploid) 3	8.669
	CNS0095595	Whole white alabastrum(diploid) 2	9.819
	CNS0095596	Whole white alabastrum(diploid) 3	6.605
	CNS0095597	Whole white alabastrum(diploid) 4	7.343
	CNS0095598	Silvery flower (diploied) 1	13.611
	CNS0095599	Silvery flower (diploied) 2	12.147
	CNS0095600	Silvery flower (diploied) 3	9.685
	CNS0095601	Golden flower (diploid) 1	15.214
	CNS0095602	Golden flower (diploid) 2	14.184
	CNS0095603	Golden flower (diploid) 3	13.207
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.784
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.335
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.768
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.552
	CNS0095610	Silvery flower (tetraploid) 1	14.722
	CNS0095611	Silvery flower (tetraploid) 2	16.999
	CNS0095612	Silvery flower (tetraploid) 3	10.210
	CNS0095613	Golden flower (tetraploid) 1	3.193
	CNS0095614	Golden flower (tetraploid) 2	9.506
	CNS0095615	Golden flower (tetraploid) 3	8.006
CRA001975	CRR073297	Stem 1	21.813
	CRR073298	Stem 2	23.880
	CRR073299	Stem 3	24.519
	CRR073300	Leaf 1	21.417
	CRR073301	Leaf 2	18.142
	CRR073302	Leaf 3	16.384
	CRR073303	Juvenile bud 1	20.671
	CRR073304	Juvenile bud 2	15.071
	CRR073305	Juvenile bud 3	28.508
	CRR073306	Third green 1	8.128
	CRR073307	Third green 2	9.819
	CRR073308	Third green 3	11.180
	CRR073309	Second white 1	3.945
	CRR073310	Second white 2	1.933
	CRR073311	Second white 3	1.744
	CRR073312	Silver flowering 1	0.724
	CRR073313	Silver flowering 2	0.639
	CRR073314	Silver flowering 3	0.966
	CRR073315	Gold flowering 1	3.210
	CRR073316	Gold flowering 2	5.245
	CRR073317	Gold flowering 3	3.440
	CRR073318	Tawny withering 1	11.917
	CRR073319	Tawny withering 2	9.342
	CRR073320	Tawny withering 3	10.331