Gene detail

Detail information of GWHGAAZE013570

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004509911.1	1.3243E-133	PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Cicer arietinum]
Swissprot	tr\|O04951\|PP2A5_ARATH	2E-133	Serine/threonine-protein phosphatase PP2A-5 catalytic subunit
trEMBL	tr\|M5WUX3\|M5WUX3_PRUPE	1E-133	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT1G69960.1	2E-106	serine/threonine protein phosphatase 2A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104549213	104551332	+
GWHAAZE00000003	mRNA	104549213	104551332	+
GWHAAZE00000003	exon	104549213	104549231	+
GWHAAZE00000003	exon	104549317	104549483	+
GWHAAZE00000003	exon	104549579	104549656	+
GWHAAZE00000003	exon	104549809	104550000	+
GWHAAZE00000003	exon	104551159	104551332	+
GWHAAZE00000003	CDS	104549213	104549231	+
GWHAAZE00000003	CDS	104549317	104549483	+
GWHAAZE00000003	CDS	104549579	104549656	+
GWHAAZE00000003	CDS	104549809	104550000	+
GWHAAZE00000003	CDS	104551159	104551332	+

Transcript Sequence
>GWHTAAZE013584 ATGTTTCTCGTGTGGAAAGTTGGCTACATTTGTATTAAGCTTTTCATCAATAATTATATTCCCCTTCTCTCACCCAGGTATGGTTTTTATGATGAATGCTTGAGAAAGTATGGCAATGCCAATGTCTGGAAGCACTTTACAGATCTATTTGATTATCTACCCCTCACAGCACTTATTGAGAGTCAGATCTTCTGTTTGCATGGAGGCCTTTCACCATCATTGGATACACTAGATAATATCCGAGCCTTGGACCGTATACAAGAGGTTCCGCACGAAGGCCCGATGTGCGACCTCTTGTGGTCTGATCCGGATGACCGATGTGGGTGGGGTATATCTCCACGTGGAGCTGGCTATACCTTTGGACAGGACATAGCGGCTCAGTTCAACCACACTAATGGGCTCACCTTAATTTCAAGGGCTCACCAGCTTGTCATGGAAGGTTACAATTGGTGTCAGGAAAAGAATGTGGTGACTGTGTTTAGTGCACCGAACTATTGTTACCGATGTGGGAATATGGCTGCAATACTAGAAATTGGGGAGAACATGGAGCAGAACTTCCTTCAATTTGACCCGGCACCTCGGCAGATTGAGCCAGACGCAACACGCAAGACTCCCGATTATTTTTTGTGA

Network for GWHGAAZE013570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	28	142	2.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04382	PPP2C	mRNA surveillance pathway	map03015
		MAPK signaling pathway - fly	map04013
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.069
	SRR3591706	second leaf	47.000
	SRR3591707	mature leaf	66.930
	SRR3591708	Shoot apex	49.269
	SRR3591709	Stem	82.175
	SRR3591710	White floral bud	66.042
	SRR3591711	White flower	76.364
	SRR3591712	Green floral bud	81.008
	SRR3591713	Yellow flower	63.253
SRP173429	SRR8316895	Juvenile bud stage	49.849
	SRR8316896	Juvenile bud stage	65.679
	SRR8316897	Juvenile bud stage	33.140
	SRR8316894	Third green stage	32.001
	SRR8316900	Third green stage	111.895
	SRR8316901	Third green stage	110.572
	SRR8316898	Complete white stage	61.437
	SRR8316899	Complete white stage	134.453
	SRR8316903	Complete white stage	73.713
	SRR8316902	Silver flowering stage	51.341
	SRR8316904	Silver flowering stage	62.284
	SRR8316905	Silver flowering stage	30.847
	SRR8316906	Gold flowering stage	101.215
	SRR8316907	Gold flowering stage	94.660
	SRR8316908	Gold flowering stage	124.637
SRP132670	SRR6706286	Control	82.378
	SRR6706287	Light intensity 50%	86.146
	SRR6706288	Light intensity 20%	88.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	77.257
	CNS0095593	Slightly white alabastrum(diploid) 2	86.000
	CNS0095594	Slightly white alabastrum(diploid) 3	68.288
	CNS0095595	Whole white alabastrum(diploid) 2	90.605
	CNS0095596	Whole white alabastrum(diploid) 3	103.452
	CNS0095597	Whole white alabastrum(diploid) 4	85.250
	CNS0095598	Silvery flower (diploied) 1	65.563
	CNS0095599	Silvery flower (diploied) 2	68.603
	CNS0095600	Silvery flower (diploied) 3	87.399
	CNS0095601	Golden flower (diploid) 1	61.039
	CNS0095602	Golden flower (diploid) 2	75.995
	CNS0095603	Golden flower (diploid) 3	70.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	88.617
	CNS0095605	Slightly white alabastrum(tetraploid) 2	85.057
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	96.011
	CNS0095608	Whole white alabastrum(tetraploid) 2	90.385
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.075
	CNS0095610	Silvery flower (tetraploid) 1	80.210
	CNS0095611	Silvery flower (tetraploid) 2	64.995
	CNS0095612	Silvery flower (tetraploid) 3	68.841
	CNS0095613	Golden flower (tetraploid) 1	60.931
	CNS0095614	Golden flower (tetraploid) 2	74.538
	CNS0095615	Golden flower (tetraploid) 3	61.919
CRA001975	CRR073297	Stem 1	62.977
	CRR073298	Stem 2	55.963
	CRR073299	Stem 3	57.918
	CRR073300	Leaf 1	88.651
	CRR073301	Leaf 2	91.000
	CRR073302	Leaf 3	79.207
	CRR073303	Juvenile bud 1	96.154
	CRR073304	Juvenile bud 2	80.515
	CRR073305	Juvenile bud 3	75.660
	CRR073306	Third green 1	98.059
	CRR073307	Third green 2	104.348
	CRR073308	Third green 3	88.214
	CRR073309	Second white 1	54.057
	CRR073310	Second white 2	64.868
	CRR073311	Second white 3	50.827
	CRR073312	Silver flowering 1	42.739
	CRR073313	Silver flowering 2	42.162
	CRR073314	Silver flowering 3	47.455
	CRR073315	Gold flowering 1	41.218
	CRR073316	Gold flowering 2	35.571
	CRR073317	Gold flowering 3	25.373
	CRR073318	Tawny withering 1	98.254
	CRR073319	Tawny withering 2	90.049
	CRR073320	Tawny withering 3	84.096