Detail information of GWHGAAZE013569


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009794958.14.54573E-51PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
Swissprottr|Q9ZSE4|PP2A_HEVBR1E-48Serine/threonine-protein phosphatase PP2A catalytic subunit
trEMBLtr|A0A068TWD7|A0A068TWD7_COFCA8E-51Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT1G10430.11E-39protein phosphatase 2A-2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene104543942104546347+
GWHAAZE00000003mRNA104543942104546347+
GWHAAZE00000003exon104543942104544091+
GWHAAZE00000003exon104546189104546347+
GWHAAZE00000003CDS104543942104544091+
GWHAAZE00000003CDS104546189104546347+
Transcript Sequence

Network for GWHGAAZE013569

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04382PPP2C mRNA surveillance pathway map03015
MAPK signaling pathway - flymap04013
TGF-beta signaling pathwaymap04350
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Tight junctionmap04530
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728
Long-term depressionmap04730

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf61.288
SRR3591706second leaf43.268
SRR3591707mature leaf60.437
SRR3591708Shoot apex41.610
SRR3591709Stem60.480
SRR3591710White floral bud60.439
SRR3591711White flower60.677
SRR3591712Green floral bud64.858
SRR3591713Yellow flower54.865
SRP173429 SRR8316895Juvenile bud stage 40.232
SRR8316896Juvenile bud stage 53.085
SRR8316897Juvenile bud stage 22.116
SRR8316894Third green stage 23.762
SRR8316900Third green stage 82.459
SRR8316901Third green stage 79.524
SRR8316898Complete white stage 54.713
SRR8316899Complete white stage 119.161
SRR8316903Complete white stage 67.923
SRR8316902Silver flowering stage43.296
SRR8316904Silver flowering stage57.712
SRR8316905Silver flowering stage25.966
SRR8316906Gold flowering stage 89.247
SRR8316907Gold flowering stage 83.057
SRR8316908Gold flowering stage 97.618
SRP132670SRR6706286Control74.171
SRR6706287Light intensity 50%81.752
SRR6706288Light intensity 20%89.078
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.808
CNS0095593Slightly white alabastrum(diploid) 238.929
CNS0095594Slightly white alabastrum(diploid) 328.288
CNS0095595Whole white alabastrum(diploid) 241.143
CNS0095596Whole white alabastrum(diploid) 342.964
CNS0095597Whole white alabastrum(diploid) 436.288
CNS0095598Silvery flower (diploied) 139.408
CNS0095599Silvery flower (diploied) 228.632
CNS0095600Silvery flower (diploied) 375.394
CNS0095601Golden flower (diploid) 136.873
CNS0095602Golden flower (diploid) 261.440
CNS0095603Golden flower (diploid) 359.138
CNS0095604Slightly white alabastrum(tetraploid) 149.654
CNS0095605Slightly white alabastrum(tetraploid) 245.045
CNS0095606Slightly white alabastrum(tetraploid) 367.867
CNS0095607Whole white alabastrum(tetraploid) 157.831
CNS0095608Whole white alabastrum(tetraploid) 252.285
CNS0095609Whole white alabastrum(tetraploid) 375.398
CNS0095610Silvery flower (tetraploid) 166.578
CNS0095611Silvery flower (tetraploid) 257.709
CNS0095612Silvery flower (tetraploid) 362.535
CNS0095613Golden flower (tetraploid) 138.979
CNS0095614Golden flower (tetraploid) 258.640
CNS0095615Golden flower (tetraploid) 351.965
CRA001975CRR073297Stem 142.057
CRR073298Stem 245.574
CRR073299Stem 355.461
CRR073300Leaf 162.733
CRR073301Leaf 266.030
CRR073302Leaf 383.423
CRR073303Juvenile bud 184.597
CRR073304Juvenile bud 271.407
CRR073305Juvenile bud 363.387
CRR073306Third green 186.305
CRR073307Third green 283.016
CRR073308Third green 369.074
CRR073309Second white 148.614
CRR073310Second white 255.444
CRR073311Second white 340.097
CRR073312Silver flowering 141.424
CRR073313Silver flowering 243.816
CRR073314Silver flowering 348.587
CRR073315Gold flowering 124.139
CRR073316Gold flowering 229.210
CRR073317Gold flowering 321.890
CRR073318Tawny withering 157.372
CRR073319Tawny withering 253.968
CRR073320Tawny withering 358.909