Gene detail

Detail information of GWHGAAZE013554

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN66363.1	0	hypothetical protein VITISV_014696 [Vitis vinifera]
Swissprot	tr\|O80452\|AMPD_ARATH	4E-120	AMP deaminase
trEMBL	tr\|A5C512\|A5C512_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66363.1}
TAIR10	AT2G38280.2	7E-105	AMP deaminase, putative / myoadenylate deaminase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104297841	104305052	+
GWHAAZE00000003	mRNA	104297841	104305052	+
GWHAAZE00000003	exon	104297841	104298306	+
GWHAAZE00000003	exon	104300991	104301197	+
GWHAAZE00000003	exon	104301631	104301791	+
GWHAAZE00000003	exon	104302343	104302553	+
GWHAAZE00000003	exon	104303124	104303299	+
GWHAAZE00000003	exon	104303416	104303467	+
GWHAAZE00000003	exon	104303618	104303745	+
GWHAAZE00000003	exon	104303835	104304014	+
GWHAAZE00000003	exon	104304140	104304207	+
GWHAAZE00000003	exon	104304890	104305052	+
GWHAAZE00000003	CDS	104297841	104298306	+
GWHAAZE00000003	CDS	104300991	104301197	+
GWHAAZE00000003	CDS	104301631	104301791	+
GWHAAZE00000003	CDS	104302343	104302553	+
GWHAAZE00000003	CDS	104303124	104303299	+
GWHAAZE00000003	CDS	104303416	104303467	+
GWHAAZE00000003	CDS	104303618	104303745	+
GWHAAZE00000003	CDS	104303835	104304014	+
GWHAAZE00000003	CDS	104304140	104304207	+
GWHAAZE00000003	CDS	104304890	104305052	+

Transcript Sequence
>GWHTAAZE013568 ATGGAGTCGTCATCATCATCATCGTCTGTTTCGTCTATCCATCTGGCACTGGCAACTCTATTCGGAGCCTCAGTAATGGCAATATCCGCCTTCTACATCCACAAGCGCAGCGTCGACCAAGTCCTCGACCGCTTCATCAAGCTCCGCCGCAAGTCCCCTCCCGACGACCACCGCTCCTTCATTTCTGAATCCGGCGGCGAAGATGATTCTTACGGCGGAGTTCTTTCTGCCTTCGATGGCGAGATCGAGACTGATAGGAGTATATGGAGGCAAAGCGAGCTATCCAAGTCGTTGGATCAAAATGCTATTATTAACTACTACAGAGCTTCCTCGTCTTTGCCGAATGCAGGTTTGTCGCACGAGTGGATTGACGAGGAGGCCAATACTAATACTATAGCCACTTCTTTGGATAAACTCAGTTTGATTCCATCCGGTCTACCACCTCTTCGAACAGCGCAAAAAGATGGAGAGGGTCAATTTGATAAATCTTCTGGTTCTAAGATGCGGATGGGATCTGTTGGTAGAATAATTACACCAAGATCCTCTGGTGGTTATGCATATGAGAGTGTGGAAGATTCTGATGAGGAAGGAACAGAGCTTGCCACTGGAGAGGACACGTTTTACACTTATGAGGGCCTAAATTCTACAGCTGAACATGTAAATATAAATGCAACCAGTGCGTTAATGCAGTTGGAGGCTGCACTCCCCAGCTGCATTGGACTGGCAGGACGCATGCCCAGCTGCATCAACGCAGTTGCAGGACCAACTGCAACACAGCTGGGCAGTGCTGCCTCCATCTGCATGCATCCGGCCTTCAAGTGTGAATGCAGCTGGGATACAAATGCAAACTATCTGAATCCATCTGCTGTTCCGTTGAAACCTGAAAACTTAAATTATGTTCAACTTCAAAAGCATAGAATGATTGAAGGTGAAGCAAAGGCCAGCGTAGATTATGGAGATGGAAAGGTGGATGCAGCCTCAGTCCAAGTGGGAATGGATCAAACTTTTGTGAATCCTATTTTACCTCTGCCAACTACATTGCATGAGTCAGTGAACATAGAAGAAGAAGAAAGAAAGATGATTCGTGAATGTTTAGATCTGCGAGAGAAATATGTTTTCAGGGAAAAAGTTGCTCCTTGGATGAAGGCACCTGTTGGGGAATCAAGTGCATCAGATGTCAAAATAGATCCTTTCCATTTTGTCCCTGTTGAAGCAACTGCCCACCACTTTAGGATGGAAGATGGAGTAGTTCACATCTATGCAAGTGAAAATGACACTGTAGATCTTTTCCCCGTTGCCAGTTCAACAACTTTTTTCACTGATATGCATCACCTACTAAGAATAATTTCAATTGGAAATGTTCGCTCCATCTGCCATCATCGACTACGATTTCTTGAGGAGAAATTCCGCCTTCATCTGTTAGTACATGCAGATCGGGAGTTTCTAGCTCAGAAGAGTGCTTCCCATAGAGATTTTTACAATATTAGAAAAGTTGATACACATGTGCATCATTCTGCTTGCATGAACCAAAAGCATCTTCTACGCTTCATTAAGTTAAAATTAAGAACAGAACCGGATGAGGTTGTCATATTCCGTGATGGCCAGTATCTTACCCTGAAGGAAGTTTTTGAGAGTTTGGATTTAAATGGGCATGATCTGAACGTTGATTTGTTGGATGTGCATGCTGACAAGAGTACCTTCCATCGATTTGACAAATTCAATCTCAAATATAATCCTTGTGGACAGAGCAGACTCAGAGAGATCTTTTTGAAGCAGGACAATCTCATCCAAGGTCTGTTGCAATATTTATGA

Network for GWHGAAZE013554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00962.23	A_deaminase	494	571	8.20E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01490	AMPD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0019239	molecular_function	deaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.893
	SRR3591706	second leaf	4.437
	SRR3591707	mature leaf	5.273
	SRR3591708	Shoot apex	9.754
	SRR3591709	Stem	8.637
	SRR3591710	White floral bud	15.524
	SRR3591711	White flower	18.707
	SRR3591712	Green floral bud	13.330
	SRR3591713	Yellow flower	9.137
SRP173429	SRR8316895	Juvenile bud stage	9.754
	SRR8316896	Juvenile bud stage	11.863
	SRR8316897	Juvenile bud stage	6.220
	SRR8316894	Third green stage	5.756
	SRR8316900	Third green stage	13.972
	SRR8316901	Third green stage	12.603
	SRR8316898	Complete white stage	6.600
	SRR8316899	Complete white stage	12.853
	SRR8316903	Complete white stage	14.731
	SRR8316902	Silver flowering stage	8.928
	SRR8316904	Silver flowering stage	13.189
	SRR8316905	Silver flowering stage	5.761
	SRR8316906	Gold flowering stage	11.743
	SRR8316907	Gold flowering stage	12.328
	SRR8316908	Gold flowering stage	13.090
SRP132670	SRR6706286	Control	11.774
	SRR6706287	Light intensity 50%	12.288
	SRR6706288	Light intensity 20%	12.514
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.820
	CNS0095593	Slightly white alabastrum(diploid) 2	3.788
	CNS0095594	Slightly white alabastrum(diploid) 3	4.434
	CNS0095595	Whole white alabastrum(diploid) 2	3.620
	CNS0095596	Whole white alabastrum(diploid) 3	4.323
	CNS0095597	Whole white alabastrum(diploid) 4	2.938
	CNS0095598	Silvery flower (diploied) 1	3.723
	CNS0095599	Silvery flower (diploied) 2	4.448
	CNS0095600	Silvery flower (diploied) 3	23.754
	CNS0095601	Golden flower (diploid) 1	2.643
	CNS0095602	Golden flower (diploid) 2	10.580
	CNS0095603	Golden flower (diploid) 3	9.861
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.252
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.115
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.383
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.177
	CNS0095610	Silvery flower (tetraploid) 1	17.339
	CNS0095611	Silvery flower (tetraploid) 2	14.573
	CNS0095612	Silvery flower (tetraploid) 3	11.567
	CNS0095613	Golden flower (tetraploid) 1	3.472
	CNS0095614	Golden flower (tetraploid) 2	8.029
	CNS0095615	Golden flower (tetraploid) 3	6.639
CRA001975	CRR073297	Stem 1	6.047
	CRR073298	Stem 2	5.667
	CRR073299	Stem 3	4.985
	CRR073300	Leaf 1	5.269
	CRR073301	Leaf 2	5.485
	CRR073302	Leaf 3	3.777
	CRR073303	Juvenile bud 1	4.006
	CRR073304	Juvenile bud 2	3.628
	CRR073305	Juvenile bud 3	6.117
	CRR073306	Third green 1	2.470
	CRR073307	Third green 2	2.148
	CRR073308	Third green 3	2.669
	CRR073309	Second white 1	2.701
	CRR073310	Second white 2	2.295
	CRR073311	Second white 3	2.026
	CRR073312	Silver flowering 1	1.726
	CRR073313	Silver flowering 2	1.505
	CRR073314	Silver flowering 3	2.145
	CRR073315	Gold flowering 1	2.025
	CRR073316	Gold flowering 2	2.231
	CRR073317	Gold flowering 3	2.110
	CRR073318	Tawny withering 1	3.244
	CRR073319	Tawny withering 2	1.317
	CRR073320	Tawny withering 3	0.995