Gene detail

Detail information of GWHGAAZE013551

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004238768.1	0	PREDICTED: probable receptor-like protein kinase At5g15080 isoform X2 [Solanum lycopersicum]
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	0	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|K4BWN1\|K4BWN1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g007050.2.1}
TAIR10	AT5G15080.1	3E-173	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104222938	104225336	-
GWHAAZE00000003	mRNA	104222938	104225336	-
GWHAAZE00000003	exon	104222938	104223470	-
GWHAAZE00000003	exon	104223560	104223683	-
GWHAAZE00000003	exon	104223761	104223897	-
GWHAAZE00000003	exon	104224011	104224146	-
GWHAAZE00000003	exon	104224245	104224579	-
GWHAAZE00000003	exon	104225159	104225336	-
GWHAAZE00000003	CDS	104225159	104225336	-
GWHAAZE00000003	CDS	104224245	104224579	-
GWHAAZE00000003	CDS	104224011	104224146	-
GWHAAZE00000003	CDS	104223761	104223897	-
GWHAAZE00000003	CDS	104223560	104223683	-
GWHAAZE00000003	CDS	104222938	104223470	-

Transcript Sequence
>GWHTAAZE013565 ATGGGATTAGGTGATGATGGTCTTAAAGTGGAGTCTTGGTATGAGGGCAAATCAACGTTTAGCAGGAAGAAGAAGAAGAATAAGAATGGGTGCTGTTTTAAGTTGAGGTTTATTGGGAGCTGTATTTCTTCATCATCTAAAGTTGACAATTCCATCAGTGGCATCGCTACTCACTGCGGAAATAAACCTACAAATGACACCAGTAGAGACCAACCCGTAGCTCCAATAGTTTCATCTACTACTACTAGTAATGAAGAGAGCAATTCTTCTTCTTCCAAACTTGAAGAAGAACTTAAAGTTTCTTCTCGGCTTCGGAAATTTGGTTTTAATGATCTTAAGTTGGCAACAAGAAATTTTAGACCAGAGTCTCTTCTTGGCGAAGGGGGTTTTGGTTGCGTGTTCAAGGGGTGGATTGAAGAGAATGGAACTGCACCAGTGAAACCAGGCACTGGACTTACTGTTGCTGTGAAAACCCTCAATCATGATGGGCTTCAGGGTCACAAAGAATGGCTGGCTGAAGTGAGTTTTCTTGGTGACCTCATTCATCCAAATTTGGTTAAATTGATTGGTTACTGCATCGAAGATGATCAGAGGTTGCTAGTCTATGAATTCATGCCTCGAGGAAGCTTGGAGAACCACCTATTTAGGCGGTCCTTGCCTCTTCCGTGGTCTATCAGGATGAAAATTGCTCTCGGTGCTGCTAAGGGTCTTGCTTTTCTTCACGAGGAAGCAGAAAGACTCGTGATATATCGTGATTTTAAAACCTCCAATATTCTACTGGATGCGGAGTACAATGCCAAGCTCTCTGATTTTGGTCTTGCCAAAGATGGTCCAGAGGGTGACAAGACTCACGTATCCACCCGTGTGATGGGAACATACGGCTATGCAGCCCCGGAATATGTGATGACAGGGCATCTTACATCAAGGAGTGATGTTTACAGCTTTGGTGTGGTTCTTCTTGAAATGATGTCTGGTAGAAGATCAATGGACAAAAACCGTCCAAGCGGGGAACAGAACCTCGTTGAGTGGGCACGGCCGCAGCTGGGAGAGCGAAGAAAGTTCTATCGGCTGATAGATCCCAAGCTCGAAGGTCATTTTTCGATGAAAGGTGCCCAGAAAGCTGCACAGCTGGTGGTGAGGTGCCTTAGCAGGGACCCAAAAGCCAGGCCACTGATGAGCGAAGTTGTTGAATGTTTAAAGCCGTTGCCGAACCTCAAGGACATGGCCAGTTCGTCTTATAACTTCAACATCATTCAAGTAGACCGAGTTGGCTACAGCCCAAATGGTGCTAGAAATGGGAGTAAAGTGCAGAATGGGGGATCGTTTTATAGGAAAGGGCAGCAAAATCATCCGAGGAGCCTGTCCATACCAAATGATTCTCATGCTTCTCCATATCATCAGAAGTTACCCCACAATTCACCAAAACCAAAGTGTAAACCATAA

Network for GWHGAAZE013551

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	123	399	4.30E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.085
	SRR3591706	second leaf	19.660
	SRR3591707	mature leaf	20.216
	SRR3591708	Shoot apex	25.016
	SRR3591709	Stem	38.135
	SRR3591710	White floral bud	42.456
	SRR3591711	White flower	65.000
	SRR3591712	Green floral bud	22.110
	SRR3591713	Yellow flower	57.551
SRP173429	SRR8316895	Juvenile bud stage	12.292
	SRR8316896	Juvenile bud stage	15.887
	SRR8316897	Juvenile bud stage	6.238
	SRR8316894	Third green stage	6.493
	SRR8316900	Third green stage	17.728
	SRR8316901	Third green stage	15.417
	SRR8316898	Complete white stage	14.907
	SRR8316899	Complete white stage	38.199
	SRR8316903	Complete white stage	23.355
	SRR8316902	Silver flowering stage	14.833
	SRR8316904	Silver flowering stage	21.722
	SRR8316905	Silver flowering stage	10.619
	SRR8316906	Gold flowering stage	47.544
	SRR8316907	Gold flowering stage	37.621
	SRR8316908	Gold flowering stage	44.067
SRP132670	SRR6706286	Control	17.257
	SRR6706287	Light intensity 50%	18.284
	SRR6706288	Light intensity 20%	16.243
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.497
	CNS0095593	Slightly white alabastrum(diploid) 2	15.389
	CNS0095594	Slightly white alabastrum(diploid) 3	15.064
	CNS0095595	Whole white alabastrum(diploid) 2	12.880
	CNS0095596	Whole white alabastrum(diploid) 3	7.449
	CNS0095597	Whole white alabastrum(diploid) 4	11.565
	CNS0095598	Silvery flower (diploied) 1	41.234
	CNS0095599	Silvery flower (diploied) 2	24.087
	CNS0095600	Silvery flower (diploied) 3	34.694
	CNS0095601	Golden flower (diploid) 1	26.219
	CNS0095602	Golden flower (diploid) 2	46.442
	CNS0095603	Golden flower (diploid) 3	42.558
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.775
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.092
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.250
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.059
	CNS0095610	Silvery flower (tetraploid) 1	36.055
	CNS0095611	Silvery flower (tetraploid) 2	32.907
	CNS0095612	Silvery flower (tetraploid) 3	46.147
	CNS0095613	Golden flower (tetraploid) 1	19.587
	CNS0095614	Golden flower (tetraploid) 2	30.703
	CNS0095615	Golden flower (tetraploid) 3	36.383
CRA001975	CRR073297	Stem 1	38.970
	CRR073298	Stem 2	35.672
	CRR073299	Stem 3	36.946
	CRR073300	Leaf 1	33.741
	CRR073301	Leaf 2	35.257
	CRR073302	Leaf 3	26.961
	CRR073303	Juvenile bud 1	29.869
	CRR073304	Juvenile bud 2	30.136
	CRR073305	Juvenile bud 3	36.050
	CRR073306	Third green 1	40.593
	CRR073307	Third green 2	31.996
	CRR073308	Third green 3	37.468
	CRR073309	Second white 1	38.535
	CRR073310	Second white 2	43.648
	CRR073311	Second white 3	41.030
	CRR073312	Silver flowering 1	46.405
	CRR073313	Silver flowering 2	40.846
	CRR073314	Silver flowering 3	29.096
	CRR073315	Gold flowering 1	58.607
	CRR073316	Gold flowering 2	63.396
	CRR073317	Gold flowering 3	45.824
	CRR073318	Tawny withering 1	53.810
	CRR073319	Tawny withering 2	47.750
	CRR073320	Tawny withering 3	45.965