Gene detail

Detail information of GWHGAAZE013550

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006438620.1	8.9539E-143	hypothetical protein CICLE_v10032366mg [Citrus clementina]
Swissprot	tr\|P42056\|VDAC2_SOLTU	2E-142	Mitochondrial outer membrane protein porin of 36 kDa
trEMBL	tr\|V4TJR4\|V4TJR4_9ROSI	3E-143	Uncharacterized protein {ECO:0000313\|EMBL:ESR51860.1}
TAIR10	AT3G01280.1	1E-84	voltage dependent anion channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104218678	104221783	+
GWHAAZE00000003	mRNA	104218678	104221783	+
GWHAAZE00000003	exon	104218678	104218726	+
GWHAAZE00000003	exon	104218847	104218914	+
GWHAAZE00000003	exon	104220514	104220600	+
GWHAAZE00000003	exon	104220701	104220909	+
GWHAAZE00000003	exon	104221477	104221783	+
GWHAAZE00000003	CDS	104218678	104218726	+
GWHAAZE00000003	CDS	104218847	104218914	+
GWHAAZE00000003	CDS	104220514	104220600	+
GWHAAZE00000003	CDS	104220701	104220909	+
GWHAAZE00000003	CDS	104221477	104221783	+

Transcript Sequence
>GWHTAAZE013564 ATGGTGAAAGGTCCAGGTCTCTATTCCGATATCGGCAAGAAAGCTCGAGATCTTCTTTACCGGGACTACCAGACCGACCATAAGTTCACTGTCACTACTTACACCTCCACTGGAGTTGTCTTTACAACCATTACCATTGATGAACCTGCACCTGGACTGAAGACAATCTTTAGCTTTATTGCTCCTGACCAGAGATCTGGCAAGGTGGAACTCCAGTATGCCCATGAGTTTGCTGGAATCAGTACCAGCATTGGACTTACTGCAAGTCCCATTGTCAACTTCTCTGGTGTGGCTGGGAACAATATAGTTTCTCTTGGAACTGATCTGTCATTTGACACCGCTACTAGAAACATTATAAAATGCAATGCGGGACTGAGTTACTCCACTTCAGATCTCATTGCTTCCTTGACCCTGAACAACAAAGGTGACACCCTCAGTGGGTCCTACTACCATATGGTAAGCCCATTGACCAGTACAGCTGTTGGTGCGGAGTTGACACATAGCTTCTCAAGTAACGAAAACACTCTGACCATCGGAACACAACATGCACTAGATCCATTGACCACAGTGAAGGCTCGAGTGAACAACTATGGCAGGACAAGTGCGCTCATCCAGCATGCGTGGCATCCAAAATCCGTTGTCACCATTACAGGAGAAGTGGACACTAGAGCAATTGAAAAAAGTGCGAAGGTTGGATTGGCTTTGGCTCTTAAGCCATGA

Network for GWHGAAZE013550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	42	232	1.00E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0098656	biological_process	anion transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane
GO:0008308	molecular_function	voltage-gated anion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.359
	SRR3591706	second leaf	39.994
	SRR3591707	mature leaf	27.670
	SRR3591708	Shoot apex	44.056
	SRR3591709	Stem	60.378
	SRR3591710	White floral bud	20.482
	SRR3591711	White flower	24.679
	SRR3591712	Green floral bud	34.289
	SRR3591713	Yellow flower	20.553
SRP173429	SRR8316895	Juvenile bud stage	41.565
	SRR8316896	Juvenile bud stage	65.341
	SRR8316897	Juvenile bud stage	33.129
	SRR8316894	Third green stage	25.680
	SRR8316900	Third green stage	73.689
	SRR8316901	Third green stage	65.655
	SRR8316898	Complete white stage	12.235
	SRR8316899	Complete white stage	72.125
	SRR8316903	Complete white stage	22.299
	SRR8316902	Silver flowering stage	15.315
	SRR8316904	Silver flowering stage	13.236
	SRR8316905	Silver flowering stage	6.554
	SRR8316906	Gold flowering stage	37.917
	SRR8316907	Gold flowering stage	36.020
	SRR8316908	Gold flowering stage	40.206
SRP132670	SRR6706286	Control	72.797
	SRR6706287	Light intensity 50%	79.832
	SRR6706288	Light intensity 20%	93.972
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.159
	CNS0095593	Slightly white alabastrum(diploid) 2	57.285
	CNS0095594	Slightly white alabastrum(diploid) 3	50.613
	CNS0095595	Whole white alabastrum(diploid) 2	46.809
	CNS0095596	Whole white alabastrum(diploid) 3	34.319
	CNS0095597	Whole white alabastrum(diploid) 4	39.315
	CNS0095598	Silvery flower (diploied) 1	41.302
	CNS0095599	Silvery flower (diploied) 2	41.208
	CNS0095600	Silvery flower (diploied) 3	32.369
	CNS0095601	Golden flower (diploid) 1	37.050
	CNS0095602	Golden flower (diploid) 2	33.656
	CNS0095603	Golden flower (diploid) 3	29.744
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	55.679
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.401
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.879
	CNS0095610	Silvery flower (tetraploid) 1	45.956
	CNS0095611	Silvery flower (tetraploid) 2	54.392
	CNS0095612	Silvery flower (tetraploid) 3	36.229
	CNS0095613	Golden flower (tetraploid) 1	27.901
	CNS0095614	Golden flower (tetraploid) 2	43.407
	CNS0095615	Golden flower (tetraploid) 3	20.863
CRA001975	CRR073297	Stem 1	82.097
	CRR073298	Stem 2	80.083
	CRR073299	Stem 3	111.019
	CRR073300	Leaf 1	78.814
	CRR073301	Leaf 2	86.151
	CRR073302	Leaf 3	120.455
	CRR073303	Juvenile bud 1	102.831
	CRR073304	Juvenile bud 2	101.763
	CRR073305	Juvenile bud 3	110.519
	CRR073306	Third green 1	10.435
	CRR073307	Third green 2	11.287
	CRR073308	Third green 3	11.755
	CRR073309	Second white 1	22.424
	CRR073310	Second white 2	16.374
	CRR073311	Second white 3	10.057
	CRR073312	Silver flowering 1	20.005
	CRR073313	Silver flowering 2	25.108
	CRR073314	Silver flowering 3	28.420
	CRR073315	Gold flowering 1	48.328
	CRR073316	Gold flowering 2	56.833
	CRR073317	Gold flowering 3	43.562
	CRR073318	Tawny withering 1	87.423
	CRR073319	Tawny withering 2	107.118
	CRR073320	Tawny withering 3	86.480