Gene detail

Detail information of GWHGAAZE013549

Functional Annotation

Database	Orthologs	Annotation
Nr	AFO84072.1	alpha-amylase [Actinidia chinensis]
Swissprot	tr\|Q94A41\|AMY3_ARATH	Alpha-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|S4SKP2\|S4SKP2_ACTCH	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT1G69830.1	alpha-amylase-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104204498	104210390	-
GWHAAZE00000003	mRNA	104204498	104210390	-
GWHAAZE00000003	exon	104204498	104204656	-
GWHAAZE00000003	exon	104204761	104204928	-
GWHAAZE00000003	exon	104205062	104205184	-
GWHAAZE00000003	exon	104205326	104205575	-
GWHAAZE00000003	exon	104205927	104206033	-
GWHAAZE00000003	exon	104206262	104206451	-
GWHAAZE00000003	exon	104206712	104207379	-
GWHAAZE00000003	exon	104207665	104208014	-
GWHAAZE00000003	exon	104208616	104208736	-
GWHAAZE00000003	exon	104208868	104208990	-
GWHAAZE00000003	exon	104209094	104209148	-
GWHAAZE00000003	exon	104209390	104209520	-
GWHAAZE00000003	exon	104210091	104210390	-
GWHAAZE00000003	CDS	104210091	104210390	-
GWHAAZE00000003	CDS	104209390	104209520	-
GWHAAZE00000003	CDS	104209094	104209148	-
GWHAAZE00000003	CDS	104208868	104208990	-
GWHAAZE00000003	CDS	104208616	104208736	-
GWHAAZE00000003	CDS	104207665	104208014	-
GWHAAZE00000003	CDS	104206712	104207379	-
GWHAAZE00000003	CDS	104206262	104206451	-
GWHAAZE00000003	CDS	104205927	104206033	-
GWHAAZE00000003	CDS	104205326	104205575	-
GWHAAZE00000003	CDS	104205062	104205184	-
GWHAAZE00000003	CDS	104204761	104204928	-
GWHAAZE00000003	CDS	104204498	104204656	-

Transcript Sequence
>GWHTAAZE013563 ATGGCCATTTCTGCATTAGAACCAAACCTCCTCCACCTCTGTACCAGAGAATCCCCCAAGCTTACAATAAATTTGAAAAACGCCAATAAAAAACCACCACCTTTGAATTACACTTTGAGGCGGCACTCGTTCAATGGCTCCAGCTCCTGCAAATTCAGGCCGACTTCTTCTTTTTCTTCTTCTTCTTCTTCTAGGGCTTTCAACCTCAGAGCTAGCTCCGTCGATACATCTGTCGTCCAAACCTCCCAATCCGCCAATATCTCCTTTACCAAAACATTTCCACTTAAACAAACTCAAAAGGTGGAGGGAAAGATATTAATCAGACTAGATAGCGGTAAAGGCGAAGAGACTTGGCAGCTTACTGTAGGATGTACTCTTCCAGGAAAATGGATTCTTCATTGGGGAGTTAATTATATCAATGATGCTTGCAGTGAATGGGACCAACCTCCTCTAGAGATGAGACCCGCAGGTTCTGTTCCCATTAAGGACTATGCCATTGAGACTCCTTTGGAAAAATCCTCTATAGCATCGGAAGTAAATACAGTTCACGAAGTGAAGATTGATTTTAACACTACTAGTTCGATTGCATCTATAAATTTCGTGCTGAAGGATGAGGAGACTGGAACTTGGTATCAGCACAGAGGGAGAGACTTCAAGGTGCCTCTTATTGGTTCCCTTAACAATGATGGCAATATTGTAGGAGCTAAAAAGGGCTTTGGCATGTGGTCAGTCCACAGGGCTATGGGACAGCTATCTAACATGCTCCTCAAATCAGACGGAGCTACTTATAAGGGCGAAGGCTTCAGAGAACCTAATCTGCAAAAAAGATCCCTTGAAGGGTTCTACGAAGAGCTTTCTGTCATAAAAGCAGTTCCTCTTGATAACTCTGTGACTGTGTCCCTCAGGAGATGCCCAGAGACAGCAAAGAATCTTGTGTACATAGAAACTGATCTATCTGGAGAGGTGGTTGTTCACTGGGGAGTTTCCAGAGGTGAAGGTAAAAAGTGGGAAATTCCACCTGAGCCATATCCGGCTGAAACATTAGTATTCAAGAATAAGGCTTTGCGGACTCCATTGCAGCAAAAAGAGGGTGGACGAGGCTGCTGGGGAGAATTTACTTTGGATGAAGGACTTACGGGTTTTCTTTTTGTAATGAAGCTAAATGAAAATATGTGGTTAAACTGTATGGGAAATGATTTTTACATACCCCTTTCAAGTTCAAGTGAAGATCAGGGGCAGAATGATTCTCATGAAAGAGCGGAATCAAGTTCTCCACTGACATCAGGAAAAAAATCAGAATTAAATCGAGAGGTTTCTGCATATGCTGGTGAAATCATTAGGGAAATAAGGAATTTGGTGAGTGACCTTTCCTCTGGAAAGAGTCAAAAAACGAAAAGCAAAAAAGTACACAAAAGCATTCTTCATGAAATTGAAAAGCTGGCTGCAGAAGCCTATGGTTTATTCAGAAGCTCCATTCCAACGTTTCAAGAGCAAGAGACTGATTTTTCTGAATCTGAGGCACTAAAACCATCTACAAAATTATGTTCAGGAACAGGCTCAGGTTTTGAAATCCTATGCCAAGGTTTTAACTGGGAGTCTCACAAATCTGGAAGATGGTACATGGAACTAAATGAAAAAGCTGCTGAATTATCTTCACTTGGTTTCACTGTTGTTTGGTTACCGCCACCTACAGAATCTATCTCACCTGAAGGCTACATGCCAAAAGATTTATATAACTTGAACTCGAGATATGGAAGTATTGATGATCTGAAGGTTCTTGTGAAGAAATTTCATGAAGTTGGTATAAATGTTCTTGGAGATGCTGTCTTAAATCATCGTTGTGCACACTTTCAGAATCCAAATGGTATTTGGAATATTTATGGTGGTCGTTTGGATTGGGATGATCGAGCAGTTGTTGCCGATGATCCACATTTCCAGGGGAAGGGAAACAAGAGTAGTGGAGATAATTTCCATGCAGCGCCAAACATAGATCATTCACAAGAATTCGTGAGAAAGGATCTCAAAGAATGGTTATGCTGGTTGAGAAAAGAAATTGGATATGATGGATGGAGACTTGATTTTGTTAGGGGATTTTGGGGTGGTTATGTGAAAGATTACTTGGATGCAAGTGAGCCATACTTTGCTGTGGGTGAATATTGGGATTCTCTCAGTTACTCATATGGTGAGATGGATCATAATCAGAATGCCCACCGGCAGAGAATTATTGACTGGATTAATGCTACTAACGGAACTGCTGGTGCATTTGATGTCACAACAAAAGGAATTCTTCATTCCGCACTCGAAAGATGTGAGTACTGGCGATTATCTGATGAAAAGGGAAAACCTCCAGGCGTTGTTGGCTGGTGGCCATCTCGTGCTGTTACCTTTATAGAGAACCATGATACAGGTTCTACTCAGGGTCATTGGAGATTTCCAGGCGGAAAGGAAATGCAAGGCTATGCTTACATCCTGACTCACCCTGGAACACCATCGGTTTTCTATGATCATGCTTTCTCTCACTACCAATCTGAAATTTCAGCACTCATCTCTGTCAGAAAGCGAAACAAGATCCACTGCCGTAGTATAGTTCAAATAACCAAAGCAGAAAAGGATGTTTATGCAGCAATGATTGATGAAAAAGTTGCAATGAAAATTGGACCAGGTTCTTATGAACCCCCAAATGGGCCCCAGGGGTGGTCTTTGGCCATCGAGGGAAAAGATTACAAGGTCTGGGAAGCATCATAA

Network for GWHGAAZE013549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	550	833	1.20E-17
PF07821.13	Alpha-amyl_C2	854	912	2.80E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.206
	SRR3591706	second leaf	1.372
	SRR3591707	mature leaf	1.112
	SRR3591708	Shoot apex	0.470
	SRR3591709	Stem	3.942
	SRR3591710	White floral bud	4.602
	SRR3591711	White flower	4.412
	SRR3591712	Green floral bud	7.775
	SRR3591713	Yellow flower	2.846
SRP173429	SRR8316895	Juvenile bud stage	1.858
	SRR8316896	Juvenile bud stage	5.631
	SRR8316897	Juvenile bud stage	2.003
	SRR8316894	Third green stage	2.741
	SRR8316900	Third green stage	8.161
	SRR8316901	Third green stage	6.032
	SRR8316898	Complete white stage	3.410
	SRR8316899	Complete white stage	4.816
	SRR8316903	Complete white stage	5.197
	SRR8316902	Silver flowering stage	2.691
	SRR8316904	Silver flowering stage	3.190
	SRR8316905	Silver flowering stage	2.037
	SRR8316906	Gold flowering stage	6.766
	SRR8316907	Gold flowering stage	4.387
	SRR8316908	Gold flowering stage	2.968
SRP132670	SRR6706286	Control	6.844
	SRR6706287	Light intensity 50%	6.602
	SRR6706288	Light intensity 20%	7.275
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.200
	CNS0095593	Slightly white alabastrum(diploid) 2	1.430
	CNS0095594	Slightly white alabastrum(diploid) 3	4.137
	CNS0095595	Whole white alabastrum(diploid) 2	2.280
	CNS0095596	Whole white alabastrum(diploid) 3	3.194
	CNS0095597	Whole white alabastrum(diploid) 4	3.671
	CNS0095598	Silvery flower (diploied) 1	1.570
	CNS0095599	Silvery flower (diploied) 2	1.292
	CNS0095600	Silvery flower (diploied) 3	9.289
	CNS0095601	Golden flower (diploid) 1	1.914
	CNS0095602	Golden flower (diploid) 2	7.255
	CNS0095603	Golden flower (diploid) 3	6.529
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.591
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.327
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.924
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.646
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.446
	CNS0095610	Silvery flower (tetraploid) 1	6.011
	CNS0095611	Silvery flower (tetraploid) 2	7.054
	CNS0095612	Silvery flower (tetraploid) 3	8.897
	CNS0095613	Golden flower (tetraploid) 1	3.736
	CNS0095614	Golden flower (tetraploid) 2	6.824
	CNS0095615	Golden flower (tetraploid) 3	4.048
CRA001975	CRR073297	Stem 1	2.569
	CRR073298	Stem 2	4.584
	CRR073299	Stem 3	2.771
	CRR073300	Leaf 1	3.524
	CRR073301	Leaf 2	3.159
	CRR073302	Leaf 3	2.534
	CRR073303	Juvenile bud 1	2.391
	CRR073304	Juvenile bud 2	4.347
	CRR073305	Juvenile bud 3	4.015
	CRR073306	Third green 1	3.011
	CRR073307	Third green 2	2.070
	CRR073308	Third green 3	2.654
	CRR073309	Second white 1	1.516
	CRR073310	Second white 2	2.345
	CRR073311	Second white 3	3.280
	CRR073312	Silver flowering 1	1.592
	CRR073313	Silver flowering 2	1.229
	CRR073314	Silver flowering 3	1.919
	CRR073315	Gold flowering 1	0.335
	CRR073316	Gold flowering 2	1.372
	CRR073317	Gold flowering 3	0.551
	CRR073318	Tawny withering 1	1.858
	CRR073319	Tawny withering 2	1.590
	CRR073320	Tawny withering 3	2.397