Gene detail

Detail information of GWHGAAZE013542

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006483210.1	5.7422E-131	PREDICTED: protein kinase APK1A, chloroplastic-like isoform X3 [Citrus sinensis]
Swissprot	tr\|O49840\|APK2B_ARATH	1E-99	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|A0A067GTA4\|A0A067GTA4_CITSI	1E-130	Uncharacterized protein {ECO:0000313\|EMBL:KDO82854.1}
TAIR10	AT2G02800.2	5E-83	protein kinase 2B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104118151	104119739	-
GWHAAZE00000003	mRNA	104118151	104119739	-
GWHAAZE00000003	exon	104118151	104118551	-
GWHAAZE00000003	exon	104118781	104118904	-
GWHAAZE00000003	exon	104118990	104119123	-
GWHAAZE00000003	exon	104119229	104119364	-
GWHAAZE00000003	exon	104119485	104119739	-
GWHAAZE00000003	CDS	104119485	104119739	-
GWHAAZE00000003	CDS	104119229	104119364	-
GWHAAZE00000003	CDS	104118990	104119123	-
GWHAAZE00000003	CDS	104118781	104118904	-
GWHAAZE00000003	CDS	104118151	104118551	-

Transcript Sequence
>GWHTAAZE013556 ATGCTTCTTGATGCAGAGAAGCTCTCACAAGATGAAAGATACAGTTCAAATGACTGCTTCAAGGTGAACATGACACACGAGGTGATTCATGCCTATAAGCTCCATGAATTTTGCTATAGTACCCTAAAATTAGCAACCAAGAAATTCAGCAAGAAGAACCTTCTTGGCATGGGTGGTTGCGGTGAAGTTTACAAAGGATGGATTGATTATTCCACCATGAAAGCTACAAAACCACATGGTCAATATCCTATTGCCAGCGAACTGAAGTTCTTGAGTAGATTCCACCATCCGCATGTGGTGAAGCTCATAGGGTACTGTTGTGAGGCGAATCACAGGATTTTAGTGTATGAATTTATGCCAAAAGGAAGCTTGGAAGCCCATCTTTTGAGAGGAAGTGATACCGAGCTAAACTGGAAGAGGCGGGTTAAAGTAGCTGTTGGCTCAGCCAAGGGTTTAGAGTACCTTCACACAGTTGGTTCAGTAATTCATCGCGATATTAAGTCCTCCAATATTCTACTTGACAATGATTTCACTCCAAAGATTTCAGATTTCGGGCTGGCTAAATTCGGGCCCCAAGGTGACAAGACACACGTCACCACCAGAGTACTCGGCACTAGAGGCTACTTTGCCCCCGAGTACGTTTACACAGGTCATTTGACACTAAAAACTGATGTATACGGCTTTGGGGTAGTTCTCCTAGAGATATTGTCAGGCTCGGGTCCGGTCAAGAGACACTCAGGTGGAGTGGCCGGGGATCTTGCACAGTGGGCTAAACCATATCTCAGCAACAAGCAAGAGCTGCACCGTGTAACTGACAAGAAACTACGAAAGAAAGTCTGTGTGGAAGAAGCTTATGAGTTTGCAGAAATCATCCTGAAGTGCCTCAACCCAAATCCAAAAGGCCGGCCAACAATGACCGAGGTAGTGAACCAATTAGAGCAATTAGAGCAAAACATGAACAAAAGGAATCAGAAATCAGTCAGAATTTCTACGAGTACTCACATGTGTCTTCGTTCTAACAATAAAAGCAGCTTTATTTATGTTCCATAA

Network for GWHGAAZE013542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	50	310	9.70E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.330
	SRR3591706	second leaf	1.086
	SRR3591707	mature leaf	2.046
	SRR3591708	Shoot apex	0.455
	SRR3591709	Stem	3.741
	SRR3591710	White floral bud	0.497
	SRR3591711	White flower	0.769
	SRR3591712	Green floral bud	0.077
	SRR3591713	Yellow flower	0.234
SRP173429	SRR8316895	Juvenile bud stage	0.943
	SRR8316896	Juvenile bud stage	2.321
	SRR8316897	Juvenile bud stage	0.538
	SRR8316894	Third green stage	0.469
	SRR8316900	Third green stage	0.404
	SRR8316901	Third green stage	0.467
	SRR8316898	Complete white stage	0.070
	SRR8316899	Complete white stage	1.800
	SRR8316903	Complete white stage	0.320
	SRR8316902	Silver flowering stage	2.453
	SRR8316904	Silver flowering stage	2.281
	SRR8316905	Silver flowering stage	0.983
	SRR8316906	Gold flowering stage	5.167
	SRR8316907	Gold flowering stage	4.082
	SRR8316908	Gold flowering stage	5.847
SRP132670	SRR6706286	Control	0.741
	SRR6706287	Light intensity 50%	0.825
	SRR6706288	Light intensity 20%	0.546
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.930
	CNS0095593	Slightly white alabastrum(diploid) 2	2.165
	CNS0095594	Slightly white alabastrum(diploid) 3	2.356
	CNS0095595	Whole white alabastrum(diploid) 2	1.758
	CNS0095596	Whole white alabastrum(diploid) 3	0.115
	CNS0095597	Whole white alabastrum(diploid) 4	1.387
	CNS0095598	Silvery flower (diploied) 1	4.660
	CNS0095599	Silvery flower (diploied) 2	3.865
	CNS0095600	Silvery flower (diploied) 3	1.815
	CNS0095601	Golden flower (diploid) 1	2.289
	CNS0095602	Golden flower (diploid) 2	2.317
	CNS0095603	Golden flower (diploid) 3	2.785
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.619
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.474
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.917
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.751
	CNS0095610	Silvery flower (tetraploid) 1	3.285
	CNS0095611	Silvery flower (tetraploid) 2	1.472
	CNS0095612	Silvery flower (tetraploid) 3	3.247
	CNS0095613	Golden flower (tetraploid) 1	3.146
	CNS0095614	Golden flower (tetraploid) 2	4.259
	CNS0095615	Golden flower (tetraploid) 3	1.720
CRA001975	CRR073297	Stem 1	1.720
	CRR073298	Stem 2	0.895
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.912
	CRR073301	Leaf 2	0.742
	CRR073302	Leaf 3	0.237
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.036
	CRR073306	Third green 1	0.224
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.185
	CRR073309	Second white 1	0.693
	CRR073310	Second white 2	1.088
	CRR073311	Second white 3	1.290
	CRR073312	Silver flowering 1	0.613
	CRR073313	Silver flowering 2	0.101
	CRR073314	Silver flowering 3	0.014
	CRR073315	Gold flowering 1	0.317
	CRR073316	Gold flowering 2	1.714
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.985
	CRR073319	Tawny withering 2	2.249
	CRR073320	Tawny withering 3	0.574