Gene detail

Detail information of GWHGAAZE013541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652320.1	0	PREDICTED: protein kinase 2B, chloroplastic isoform X2 [Vitis vinifera]
Swissprot	tr\|O49840\|APK2B_ARATH	0	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|D7TNC2\|D7TNC2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31995.3}
TAIR10	AT2G02800.2	7E-171	protein kinase 2B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	104115324	104117188	+
GWHAAZE00000003	mRNA	104115324	104117188	+
GWHAAZE00000003	exon	104115324	104115659	+
GWHAAZE00000003	exon	104115749	104115884	+
GWHAAZE00000003	exon	104116015	104116151	+
GWHAAZE00000003	exon	104116247	104116370	+
GWHAAZE00000003	exon	104116734	104117188	+
GWHAAZE00000003	CDS	104115324	104115659	+
GWHAAZE00000003	CDS	104115749	104115884	+
GWHAAZE00000003	CDS	104116015	104116151	+
GWHAAZE00000003	CDS	104116247	104116370	+
GWHAAZE00000003	CDS	104116734	104117188	+

Transcript Sequence
>GWHTAAZE013555 CCCTCAAGAATTGCCAGCAAGACCAGCAACCCTTCCGCTCGTTCCAGCCTAACCAATTCATATAGTGAAAGGAGCAGTGTCGAGTCTCTTCCTACTCCAAAATCTGAAGGCGAAATACTATCATCATCAAACGTGAAGGCCTTCTCATTTAATGAGTTGAGGAACGCCACCAGAAACTTTCGTCCCGAAAGTCTTCTTGGTGAAGGAGGATTTGGTTATGTTTTCAAAGGATGGATCGATGAACACATGCTTACTGCTGCAAAGCCTGGATCTGGAATGGTCATTGCTGTCAAGAAGCTTAAACCTGAGGGTTTCCAAGGCCACAAGGAGTGGTTGACAGAAGTTAATTATCTGGGGCAGCTGCATCATCCGAATCTCGTTAAACTTATTGGGTACTGTTCGGATGGTGACAATCGGCTTTTGGTTTATGAGTTCATGCCTAAAGGGAGTTTGGAGAATCATCTTTTTAGAAGAGGGCCTCAACCGCTTTCTTGGGCAACGAGGATCAAAGTGGCGATAGGTGCTGCTAGAGGCCTCTCTTTCCTGCACGACGCTGAAGCACAAGTTATATACCGTGATTTCAAGGCTTCTAATATCCTTCTTGATGCAGAATTCAATGCAAAGCTGTCTGATTTTGGTTTGGCTAAAGCGGGCCCAACAGGTGATAGGACTCACGTGTCCACTCAAGTAATGGGGACTCATGGGTATGCAGCACCAGAATATGTTGCTACAGGTCGGTTGACAGCAAAGAGTGATGTATACAGCTTTGGGGTTGTTTTGCTAGAGCTATTGTCTGGGCGTCGGGCTGTTGATAAAACAAAGGTTGTTATAGAGCAAAATCTTGTGGACTGGGCAAAACCATATTTGGGTGATAAGAGAAAATTATTTCGGATTATGGACACCAAGTTGGAGGGTCAGTATCCTCAGAAAGGAGCCTACACCTGTGCTAACCTTGCTTTGCAGTGTCTAAGCACTGAACCTAAAGTTAGACCACGTATGGCAGAAGTATTGGCGATGTTAGAAGATCTCCAAGCCCCAAAAAGCGCAGCCAAACACTCCCTAATAGACAATCGGGCTGTTTCTGATTCTGTCCGTAAGTCACCTTTGAGACAGCACCGTTCACCTCTGAATCTCATACCCTCTGCGTCCCCGTTGCCAGCTCACCGCCAATCTCCATGTGTACGATAA

Network for GWHGAAZE013541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	64	339	3.30E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.888
	SRR3591706	second leaf	15.705
	SRR3591707	mature leaf	39.189
	SRR3591708	Shoot apex	10.341
	SRR3591709	Stem	56.646
	SRR3591710	White floral bud	17.783
	SRR3591711	White flower	36.386
	SRR3591712	Green floral bud	9.139
	SRR3591713	Yellow flower	19.736
SRP173429	SRR8316895	Juvenile bud stage	8.148
	SRR8316896	Juvenile bud stage	13.265
	SRR8316897	Juvenile bud stage	4.144
	SRR8316894	Third green stage	3.245
	SRR8316900	Third green stage	4.075
	SRR8316901	Third green stage	5.202
	SRR8316898	Complete white stage	1.954
	SRR8316899	Complete white stage	18.904
	SRR8316903	Complete white stage	4.261
	SRR8316902	Silver flowering stage	14.441
	SRR8316904	Silver flowering stage	15.590
	SRR8316905	Silver flowering stage	11.266
	SRR8316906	Gold flowering stage	58.073
	SRR8316907	Gold flowering stage	51.362
	SRR8316908	Gold flowering stage	61.221
SRP132670	SRR6706286	Control	15.059
	SRR6706287	Light intensity 50%	13.959
	SRR6706288	Light intensity 20%	12.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.153
	CNS0095593	Slightly white alabastrum(diploid) 2	12.688
	CNS0095594	Slightly white alabastrum(diploid) 3	12.616
	CNS0095595	Whole white alabastrum(diploid) 2	11.194
	CNS0095596	Whole white alabastrum(diploid) 3	2.215
	CNS0095597	Whole white alabastrum(diploid) 4	8.389
	CNS0095598	Silvery flower (diploied) 1	27.509
	CNS0095599	Silvery flower (diploied) 2	25.185
	CNS0095600	Silvery flower (diploied) 3	16.211
	CNS0095601	Golden flower (diploid) 1	25.720
	CNS0095602	Golden flower (diploid) 2	22.581
	CNS0095603	Golden flower (diploid) 3	23.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.734
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.634
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.076
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.399
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.074
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.080
	CNS0095610	Silvery flower (tetraploid) 1	14.414
	CNS0095611	Silvery flower (tetraploid) 2	9.473
	CNS0095612	Silvery flower (tetraploid) 3	32.347
	CNS0095613	Golden flower (tetraploid) 1	9.791
	CNS0095614	Golden flower (tetraploid) 2	17.176
	CNS0095615	Golden flower (tetraploid) 3	19.453
CRA001975	CRR073297	Stem 1	19.262
	CRR073298	Stem 2	17.310
	CRR073299	Stem 3	16.144
	CRR073300	Leaf 1	12.772
	CRR073301	Leaf 2	14.798
	CRR073302	Leaf 3	12.125
	CRR073303	Juvenile bud 1	6.850
	CRR073304	Juvenile bud 2	5.585
	CRR073305	Juvenile bud 3	7.855
	CRR073306	Third green 1	43.833
	CRR073307	Third green 2	22.911
	CRR073308	Third green 3	31.231
	CRR073309	Second white 1	81.541
	CRR073310	Second white 2	89.861
	CRR073311	Second white 3	87.186
	CRR073312	Silver flowering 1	82.971
	CRR073313	Silver flowering 2	65.049
	CRR073314	Silver flowering 3	56.893
	CRR073315	Gold flowering 1	44.527
	CRR073316	Gold flowering 2	54.009
	CRR073317	Gold flowering 3	41.924
	CRR073318	Tawny withering 1	37.894
	CRR073319	Tawny withering 2	38.719
	CRR073320	Tawny withering 3	40.243